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Sm-like protein 3D structures

From Proteopedia

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Current revision (11:13, 18 January 2024) (edit) (undo)
 
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**[[3pgw]] – hSmB + hSmD1 + hSmD3 + hSmE + hSmF + hSmG + hU1 snRNP + DNA <br />
**[[3pgw]] – hSmB + hSmD1 + hSmD3 + hSmE + hSmF + hSmG + hU1 snRNP + DNA <br />
-
**[[2y9a]], [[4wzj]] - hSmB + hSmD1 + hSmD2 + hSmD3 + hSmE + hSmF + hSmG + hU4A snRNP <br />
+
**[[[4wzj] - hSmB + hSmD1 + hSmD2 + hSmD3 + hSmE + hSmF + hSmG + hU4A snRNP <br />
**[[5xjl]] - hSmD1 + hSmD2 + hSmD3 + hSmE + hSmF + hSmG + SMN-interacting protein + SMN protein<br />
**[[5xjl]] - hSmD1 + hSmD2 + hSmD3 + hSmE + hSmF + hSmG + SMN-interacting protein + SMN protein<br />
**[[1n9r]], [[1n9s]] – ySmF<br />
**[[1n9r]], [[1n9s]] – ySmF<br />

Current revision

Updated on 18-January-2024 {{#tree:id=OrganizedByTopic|openlevels=0|

  • Sm-like protein
    • 6v4x, 6vax – hLSm10 + LSm11 in histone pre-mRNA machinery – human - Cryo EM
    • 8g1u – hLSm11 in methylosome complex - Cryo EM
    • 2fb7 – zLSm14 – zebra fish – NMR
    • 2vxf - zLSm14 (mutant) – NMR
    • 3bw1 – yLSm3 - yeast
    • 4n0a – yLSm2 + LSm3 + DNA topoisomerase 2-associated protein
    • 1i81, 1jri, 1mgq, 1jbm – MtSm – Methanothermobacter thermautotrophicus
    • 1loj – MtSm + UMP
    • 1i8f, 1m5q, 1lnx – Sm – Pyrobaculum aerophilum
    • 1i4k – AfSm1 – Archaeoglobus fulgidus
    • 1i5l – AfSm1 + RNA
    • 1ljo – AfSm2
    • 1m8v – PaSm1 + RNA – Pyrococcus abyssii
    • 1h64 – PaSm
    • 3pgg – LSm5 – Cryptosporidium parvum
    • 5mki, 5mkn – LSm – Methanococcus vannielii
    • 4xq3 – LSm – Sulfolobus solfataricus
    • 5mkl – LSm – Sulfolobus acidocaldarius
  • Sm-like protein in spliceosome
    • 4wzj, 5gam, 5gao – hLSm2 + LSm3 + LSm4 + LSm5 + LSm6 + LSm7 + LSm8 in spliceosome - human
    • 6ahd, 6ah0, 6qw6, 3jcr, 6qx9, 5o9z, 6id1, 6id0, 6icz, 5z58, 5z57, 5z56, 5mqf, 6fft, 5xjc, 5yzg, 7a5p, 6qdv – hLSm2 + LSm3 + LSm4 + LSm5 + LSm6 + LSm7 + LSm8 in spliceosome – Cryo EM
    • 7abg – hLSm in spliceosome – Cryo EM
    • 4c8q – yLSm1 + LSm2 + LSm3 + LSm4 + LSm5 + LSm6 + LSm7 + DNA topoisomerase 2-associated protein
    • 4c92, 4m75 – yLSm1 + LSm2 + LSm3 + LSm4 + LSm5 + LSm6 + LSm7
    • 4c8q – yLSm1 + LSm2 + LSm3 + LSm4 + LSm5 + LSm6 + LSm7 + DNA topoisomerase 2-associated protein
    • 4m77, 4m78 – yLSm2 + LSm3 + LSm4 + LSm5 + LSm6 + LSm7 + LSm8
    • 5zwo, 5zwn, 5zwm, 6g90, 3jcm, 5gan, 5nrl, 5lj3, 6n7p, 5lqw, 5lj5, 5mps, 5mq0, 5gmk, 6j6g, 6j6h, 5ylz, 6j6q, 6j6n, 5wsg, 6bk8, 6exn, 5y88, 5gm6 – yLSm2 + LSm3 + LSm4 + LSm5 + LSm6 + LSm7 + LSm8 in spliceosome – Cryo EM
    • 4m7a – yLSm2 + LSm3 + LSm4 + LSm5 + LSm6 + LSm7 + LSm8 + U6 SnRNA
    • 5vsu, 6aso – yLSm2 + LSm3 + LSm4 + LSm5 + LSm6 + LSm7 + LSm8 + U6 SnRNA + RNA
    • 4m7d – yLSm2 + LSm3 + LSm4 + LSm5 + LSm6 + LSm7 + LSm8 + RNA
    • 3swn, 4emk – fyLSm5 + LSm6 + LSm7 – fission yeast
    • 6ppn, 6ppp – fyLSm2 + LSm3 + LSm4 + LSm5 + LSm6 + LSm7 + LSm8 + U6 snRNA
    • 6ppv, 6ppq – fyLSm2 + LSm3 + LSm4 + LSm5 + LSm6 + LSm7 + LSm8 + RNA
    • 3jb9 – fyLSm2 + LSm3 + LSm4 + LSm5 + LSm6 + LSm7 + LSm8 in spliceosome – Cryo EM
  • Sm protein
    • 3pgw – hSmB + hSmD1 + hSmD3 + hSmE + hSmF + hSmG + hU1 snRNP + DNA
    • [[[4wzj] - hSmB + hSmD1 + hSmD2 + hSmD3 + hSmE + hSmF + hSmG + hU4A snRNP
    • 5xjl - hSmD1 + hSmD2 + hSmD3 + hSmE + hSmF + hSmG + SMN-interacting protein + SMN protein
    • 1n9r, 1n9s – ySmF

}}

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Joel L. Sussman, Michal Harel

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