This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
6i4a
From Proteopedia
(Difference between revisions)
| (One intermediate revision not shown.) | |||
| Line 3: | Line 3: | ||
<StructureSection load='6i4a' size='340' side='right'caption='[[6i4a]], [[Resolution|resolution]] 2.25Å' scene=''> | <StructureSection load='6i4a' size='340' side='right'caption='[[6i4a]], [[Resolution|resolution]] 2.25Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[6i4a]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6I4A OCA]. For a <b>guided tour on the structure components</b> use [ | + | <table><tr><td colspan='2'>[[6i4a]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa_LESB58 Pseudomonas aeruginosa LESB58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6I4A OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6I4A FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=H2Q:(2~{R})-4-[6-[4-[1-(hydroxymethyl)cyclopropyl]buta-1,3-diynyl]-3-oxidanylidene-1~{H}-pyrrolo[1,2-c]imidazol-2-yl]-2-methyl-2-methylsulfonyl-~{N}-oxidanyl-butanamide'>H2Q</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.251Å</td></tr> |
| - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=H2Q:(2~{R})-4-[6-[4-[1-(hydroxymethyl)cyclopropyl]buta-1,3-diynyl]-3-oxidanylidene-1~{H}-pyrrolo[1,2-c]imidazol-2-yl]-2-methyl-2-methylsulfonyl-~{N}-oxidanyl-butanamide'>H2Q</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6i4a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6i4a OCA], [https://pdbe.org/6i4a PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6i4a RCSB], [https://www.ebi.ac.uk/pdbsum/6i4a PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6i4a ProSAT]</span></td></tr> |
</table> | </table> | ||
== Function == | == Function == | ||
| - | [ | + | [https://www.uniprot.org/uniprot/LPXC_PSEA8 LPXC_PSEA8] Catalyzes the hydrolysis of UDP-3-O-myristoyl-N-acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis. |
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
| Line 19: | Line 19: | ||
</div> | </div> | ||
<div class="pdbe-citations 6i4a" style="background-color:#fffaf0;"></div> | <div class="pdbe-citations 6i4a" style="background-color:#fffaf0;"></div> | ||
| + | |||
| + | ==See Also== | ||
| + | *[[UDP-3-O-acyl-N-acetylglucosamine deacetylase|UDP-3-O-acyl-N-acetylglucosamine deacetylase]] | ||
== References == | == References == | ||
<references/> | <references/> | ||
| Line 24: | Line 27: | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
| - | [[Category: | + | [[Category: Pseudomonas aeruginosa LESB58]] |
| - | [[Category: Blumstein | + | [[Category: Blumstein A-C]] |
| - | [[Category: Bur | + | [[Category: Bur D]] |
| - | [[Category: Diethelm | + | [[Category: Diethelm S]] |
| - | [[Category: Enderlin-Paput | + | [[Category: Enderlin-Paput M]] |
| - | [[Category: Gauvin | + | [[Category: Gauvin J-C]] |
| - | [[Category: Gnerre | + | [[Category: Gnerre C]] |
| - | [[Category: Hermann | + | [[Category: Hermann C]] |
| - | [[Category: Hubschwerlen | + | [[Category: Hubschwerlen C]] |
| - | [[Category: Jacob | + | [[Category: Jacob L]] |
| - | [[Category: Lange | + | [[Category: Lange R]] |
| - | [[Category: Locher | + | [[Category: Locher HH]] |
| - | [[Category: Masse | + | [[Category: Mac Sweeney A]] |
| - | [[Category: Mathieu | + | [[Category: Masse F]] |
| - | [[Category: Mirre | + | [[Category: Mathieu G]] |
| - | [[Category: Panchaud | + | [[Category: Mirre A]] |
| - | [[Category: Ritz | + | [[Category: Panchaud P]] |
| - | [[Category: Rueedi | + | [[Category: Ritz D]] |
| - | [[Category: Schmitt | + | [[Category: Rueedi G]] |
| - | [[Category: Seeland | + | [[Category: Schmitt C]] |
| - | [[Category: Seiler | + | [[Category: Seeland S]] |
| - | [[Category: Specklin | + | [[Category: Seiler P]] |
| - | [[Category: Surivet | + | [[Category: Specklin J-L]] |
| - | + | [[Category: Surivet J-P]] | |
| - | [[Category: Tidten-Luksch | + | [[Category: Tidten-Luksch N]] |
| - | + | ||
| - | + | ||
Current revision
Structure of P. aeruginosa LpxC with compound 18d: (2R)-N-Hydroxy-4-(6-((1-(hydroxymethyl)cyclopropyl)buta-1,3-diyn-1-yl)-3-oxo-1H-pyrrolo[1,2-c]imidazol-2(3H)-yl)-2-methyl-2-(methylsulfonyl)butanamide
| |||||||||||
Categories: Large Structures | Pseudomonas aeruginosa LESB58 | Blumstein A-C | Bur D | Diethelm S | Enderlin-Paput M | Gauvin J-C | Gnerre C | Hermann C | Hubschwerlen C | Jacob L | Lange R | Locher HH | Mac Sweeney A | Masse F | Mathieu G | Mirre A | Panchaud P | Ritz D | Rueedi G | Schmitt C | Seeland S | Seiler P | Specklin J-L | Surivet J-P | Tidten-Luksch N
