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6qdy

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Current revision (11:58, 24 January 2024) (edit) (undo)
 
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<StructureSection load='6qdy' size='340' side='right'caption='[[6qdy]], [[Resolution|resolution]] 1.42&Aring;' scene=''>
<StructureSection load='6qdy' size='340' side='right'caption='[[6qdy]], [[Resolution|resolution]] 1.42&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[6qdy]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Sporosarcina_pasteurii Sporosarcina pasteurii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6QDY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6QDY FirstGlance]. <br>
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<table><tr><td colspan='2'>[[6qdy]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Sporosarcina_pasteurii Sporosarcina pasteurii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6QDY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6QDY FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=F:FLUORIDE+ION'>F</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=URE:UREA'>URE</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.416&#8491;</td></tr>
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CXM:N-CARBOXYMETHIONINE'>CXM</scene>, <scene name='pdbligand=KCX:LYSINE+NZ-CARBOXYLIC+ACID'>KCX</scene></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CXM:N-CARBOXYMETHIONINE'>CXM</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=F:FLUORIDE+ION'>F</scene>, <scene name='pdbligand=KCX:LYSINE+NZ-CARBOXYLIC+ACID'>KCX</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=URE:UREA'>URE</scene></td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Urease Urease], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.5 3.5.1.5] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6qdy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6qdy OCA], [https://pdbe.org/6qdy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6qdy RCSB], [https://www.ebi.ac.uk/pdbsum/6qdy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6qdy ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6qdy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6qdy OCA], [http://pdbe.org/6qdy PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6qdy RCSB], [http://www.ebi.ac.uk/pdbsum/6qdy PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6qdy ProSAT]</span></td></tr>
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</table>
</table>
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== Function ==
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[https://www.uniprot.org/uniprot/URE3_SPOPA URE3_SPOPA]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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</div>
</div>
<div class="pdbe-citations 6qdy" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 6qdy" style="background-color:#fffaf0;"></div>
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==See Also==
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*[[Urease 3D structures|Urease 3D structures]]
== References ==
== References ==
<references/>
<references/>
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[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Sporosarcina pasteurii]]
[[Category: Sporosarcina pasteurii]]
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[[Category: Urease]]
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[[Category: Benini S]]
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[[Category: Benini, S]]
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[[Category: Cianci M]]
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[[Category: Cianci, M]]
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[[Category: Ciurli S]]
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[[Category: Ciurli, S]]
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[[Category: Mazzei L]]
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[[Category: Mazzei, L]]
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[[Category: Hydrolase]]
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[[Category: Nickel]]
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[[Category: Urea]]
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Current revision

The crystal structure of Sporosarcina pasteurii urease in complex with its substrate urea

PDB ID 6qdy

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OCA

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