This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


6rav

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "6rav" [edit=sysop:move=sysop])
Current revision (12:18, 24 January 2024) (edit) (undo)
 
(One intermediate revision not shown.)
Line 3: Line 3:
<StructureSection load='6rav' size='340' side='right'caption='[[6rav]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
<StructureSection load='6rav' size='340' side='right'caption='[[6rav]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[6rav]] is a 2 chain structure. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=6qsv 6qsv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6RAV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6RAV FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[6rav]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=6qsv 6qsv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6RAV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6RAV FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=JGQ:4-[(2~{S},4~{S})-4-ethoxy-1-[(5-methoxy-7-methyl-1~{H}-indol-4-yl)methyl]piperidin-2-yl]benzoic+acid'>JGQ</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[6qsx|6qsx]], [[6qsw|6qsw]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=JGQ:4-[(2~{S},4~{S})-4-ethoxy-1-[(5-methoxy-7-methyl-1~{H}-indol-4-yl)methyl]piperidin-2-yl]benzoic+acid'>JGQ</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Alternative-complement-pathway_C3/C5_convertase Alternative-complement-pathway C3/C5 convertase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.21.47 3.4.21.47] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6rav FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6rav OCA], [https://pdbe.org/6rav PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6rav RCSB], [https://www.ebi.ac.uk/pdbsum/6rav PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6rav ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6rav FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6rav OCA], [http://pdbe.org/6rav PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6rav RCSB], [http://www.ebi.ac.uk/pdbsum/6rav PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6rav ProSAT]</span></td></tr>
+
</table>
</table>
== Disease ==
== Disease ==
-
[[http://www.uniprot.org/uniprot/CFAB_HUMAN CFAB_HUMAN]] Defects in CFB are a cause of susceptibility to hemolytic uremic syndrome atypical type 4 (AHUS4) [MIM:[http://omim.org/entry/612924 612924]]. An atypical form of hemolytic uremic syndrome. It is a complex genetic disease characterized by microangiopathic hemolytic anemia, thrombocytopenia, renal failure and absence of episodes of enterocolitis and diarrhea. In contrast to typical hemolytic uremic syndrome, atypical forms have a poorer prognosis, with higher death rates and frequent progression to end-stage renal disease. Note=Susceptibility to the development of atypical hemolytic uremic syndrome can be conferred by mutations in various components of or regulatory factors in the complement cascade system. Other genes may play a role in modifying the phenotype.<ref>PMID:17182750</ref> <ref>PMID:20513133</ref>
+
[https://www.uniprot.org/uniprot/CFAB_HUMAN CFAB_HUMAN] Defects in CFB are a cause of susceptibility to hemolytic uremic syndrome atypical type 4 (AHUS4) [MIM:[https://omim.org/entry/612924 612924]. An atypical form of hemolytic uremic syndrome. It is a complex genetic disease characterized by microangiopathic hemolytic anemia, thrombocytopenia, renal failure and absence of episodes of enterocolitis and diarrhea. In contrast to typical hemolytic uremic syndrome, atypical forms have a poorer prognosis, with higher death rates and frequent progression to end-stage renal disease. Note=Susceptibility to the development of atypical hemolytic uremic syndrome can be conferred by mutations in various components of or regulatory factors in the complement cascade system. Other genes may play a role in modifying the phenotype.<ref>PMID:17182750</ref> <ref>PMID:20513133</ref>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/CFAB_HUMAN CFAB_HUMAN]] Factor B which is part of the alternate pathway of the complement system is cleaved by factor D into 2 fragments: Ba and Bb. Bb, a serine protease, then combines with complement factor 3b to generate the C3 or C5 convertase. It has also been implicated in proliferation and differentiation of preactivated B-lymphocytes, rapid spreading of peripheral blood monocytes, stimulation of lymphocyte blastogenesis and lysis of erythrocytes. Ba inhibits the proliferation of preactivated B-lymphocytes.
+
[https://www.uniprot.org/uniprot/CFAB_HUMAN CFAB_HUMAN] Factor B which is part of the alternate pathway of the complement system is cleaved by factor D into 2 fragments: Ba and Bb. Bb, a serine protease, then combines with complement factor 3b to generate the C3 or C5 convertase. It has also been implicated in proliferation and differentiation of preactivated B-lymphocytes, rapid spreading of peripheral blood monocytes, stimulation of lymphocyte blastogenesis and lysis of erythrocytes. Ba inhibits the proliferation of preactivated B-lymphocytes.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 26: Line 25:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Alternative-complement-pathway C3/C5 convertase]]
+
[[Category: Homo sapiens]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Adams, C M]]
+
[[Category: Adams CM]]
-
[[Category: Anderson, K]]
+
[[Category: Anderson K]]
-
[[Category: Argikar, U]]
+
[[Category: Argikar U]]
-
[[Category: Crowley, M]]
+
[[Category: Crowley M]]
-
[[Category: Cumin, F]]
+
[[Category: Cumin F]]
-
[[Category: Eder, J]]
+
[[Category: Eder J]]
-
[[Category: Ehara, T]]
+
[[Category: Ehara T]]
-
[[Category: Erbel, P]]
+
[[Category: Erbel P]]
-
[[Category: Flohr, S]]
+
[[Category: Flohr S]]
-
[[Category: Gerhartz, B]]
+
[[Category: Gerhartz B]]
-
[[Category: Harrison, R]]
+
[[Category: Harrison R]]
-
[[Category: Hughes, N]]
+
[[Category: Hughes N]]
-
[[Category: Jaffee, B]]
+
[[Category: Jaffee B]]
-
[[Category: Karki, R]]
+
[[Category: Karki R]]
-
[[Category: Maibaum, J]]
+
[[Category: Mac Sweeney A]]
-
[[Category: Mainolfi, N]]
+
[[Category: Maibaum J]]
-
[[Category: Mogi, M]]
+
[[Category: Mainolfi N]]
-
[[Category: Sedrani, R]]
+
[[Category: Mogi M]]
-
[[Category: Sellner, H]]
+
[[Category: Sedrani R]]
-
[[Category: Sirockin, F]]
+
[[Category: Sellner H]]
-
[[Category: Smith, T M]]
+
[[Category: Sirockin F]]
-
[[Category: Sweeney, A Mac]]
+
[[Category: Smith TM]]
-
[[Category: Valeur, E]]
+
[[Category: Valeur E]]
-
[[Category: Wiesmann, C]]
+
[[Category: Wiesmann C]]
-
[[Category: C3 convertase]]
+
-
[[Category: Complement]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Immune]]
+
-
[[Category: Inhibitor]]
+

Current revision

Complement factor B protease domain in complex with the reversible inhibitor 4-((2S,4S)-4-ethoxy-1-((5-methoxy-7-methyl-1H-indol-4-yl)methyl)piperidin-2-yl)benzoic acid

PDB ID 6rav

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools