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6s54

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Transaminase from Pseudomonas fluorescens

Structural highlights

6s54 is a 4 chain structure with sequence from Pseudomonas fluorescens. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:	X-ray diffraction, Resolution 2.21Å
Ligands:	, ,
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

A0A2S8XV37_9PSED

Publication Abstract from PubMed

Transaminases are pyridoxal-5'-phosphate (PLP) binding enzymes, broadly studied for their potential industrial application. Their affinity for PLP has been related to their performance and operational stability and while significant differences in PLP requirements have been reported, the environment of the PLP-binding pocket is highly conserved. In this study, thorough analysis of the residue interaction network of three homologous transaminases Halomonas elongata (HeTA), Chromobacterium violaceum (CvTA), and Pseudomonas fluorescens (PfTA) revealed a single residue difference in their PLP binding pocket: an asparagine at position 120 in HeTA. N120 is suitably positioned to interact with an aspartic acid known to protonate the PLP pyridinium nitrogen, while the equivalent position is occupied by a valine in the other two enzymes. Three different mutants were constructed (HeTA-N120V, CvTA-V124N, and PfTA-V129N) and functionally analyzed. Notably, in HeTA and CvTA, the asparagine variants, consistently exhibited a higher thermal stability and a significant decrease in the dissociation constant (K d ) for PLP, confirming the important role of N120 in PLP binding. Moreover, the reaction intermediate pyridoxamine-5'-phosphate (PMP) was released more slowly into the bulk, indicating that the mutation also enhances their PMP binding capacity. The crystal structure of PfTA, elucidated in this work, revealed a tetrameric arrangement with the PLP binding sites near the subunit interface. In this case, the V129N mutation had a negligible effect on PLP-binding, but it reduced its temperature stability possibly destabilizing the quaternary structure.

Enhancing PLP-Binding Capacity of Class-III omega-Transaminase by Single Residue Substitution.,Roura Padrosa D, Alaux R, Smith P, Dreveny I, Lopez-Gallego F, Paradisi F Front Bioeng Biotechnol. 2019 Oct 18;7:282. doi: 10.3389/fbioe.2019.00282., eCollection 2019. PMID:31681755^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Roura Padrosa D, Alaux R, Smith P, Dreveny I, Lopez-Gallego F, Paradisi F. Enhancing PLP-Binding Capacity of Class-III omega-Transaminase by Single Residue Substitution. Front Bioeng Biotechnol. 2019 Oct 18;7:282. doi: 10.3389/fbioe.2019.00282., eCollection 2019. PMID:31681755 doi:http://dx.doi.org/10.3389/fbioe.2019.00282

1 Structural highlights
2 Function
3 Publication Abstract from PubMed
4 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/6s54"

@@ Line 3: / Line 3: @@
 <StructureSection load='6s54' size='340' side='right'caption='[[6s54]], [[Resolution|resolution]] 2.21&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[6s54]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6S54 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6S54 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[6s54]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_fluorescens Pseudomonas fluorescens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6S54 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6S54 FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.21&#8491;</td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6s54 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6s54 OCA], [http://pdbe.org/6s54 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6s54 RCSB], [http://www.ebi.ac.uk/pdbsum/6s54 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6s54 ProSAT]</span></td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6s54 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6s54 OCA], [https://pdbe.org/6s54 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6s54 RCSB], [https://www.ebi.ac.uk/pdbsum/6s54 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6s54 ProSAT]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/A0A2S8XV37_9PSED A0A2S8XV37_9PSED]
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 21: / Line 24: @@
 </StructureSection>
 [[Category: Large Structures]]
-[[Category: Dreveny, I]]
+[[Category: Pseudomonas fluorescens]]
-[[Category: Lopez-Gallego, F]]
+[[Category: Dreveny I]]
-[[Category: Padrosa, D Roura]]
+[[Category: Lopez-Gallego F]]
-[[Category: Paradisi, F]]
+[[Category: Paradisi F]]
-[[Category: Smith, P]]
+[[Category: Roura Padrosa D]]
-[[Category: Class-i omega-transaminase]]
+[[Category: Smith P]]
-[[Category: Plp]]
-[[Category: Pyridoxal phosphate]]
-[[Category: Transaminase]]
-[[Category: Transferase]]

6s54

From Proteopedia

Current revision

Transaminase from Pseudomonas fluorescens

Structural highlights

Function

Publication Abstract from PubMed

References

Contents

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