This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3ilr

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 3: Line 3:
<StructureSection load='3ilr' size='340' side='right'caption='[[3ilr]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
<StructureSection load='3ilr' size='340' side='right'caption='[[3ilr]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3ilr]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacillus_thetaiotaomicron"_distaso_1912 "bacillus thetaiotaomicron" distaso 1912]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ILR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3ILR FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3ilr]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacteroides_thetaiotaomicron Bacteroides thetaiotaomicron]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ILR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3ILR FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=SGN:N,O6-DISULFO-GLUCOSAMINE'>SGN</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=IXD:4-DEOXY-2-O-SULFO-BETA-D-ERYTHRO-HEX-4-ENOPYRANURONIC+ACID'>IXD</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=IXD:4-DEOXY-2-O-SULFO-BETA-D-ERYTHRO-HEX-4-ENOPYRANURONIC+ACID'>IXD</scene>, <scene name='pdbligand=SGN:N,O6-DISULFO-GLUCOSAMINE'>SGN</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3ikw|3ikw]]</div></td></tr>
+
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BT_4675 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=818 "Bacillus thetaiotaomicron" Distaso 1912])</td></tr>
+
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Heparin_lyase Heparin lyase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.2.7 4.2.2.7] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ilr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ilr OCA], [https://pdbe.org/3ilr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ilr RCSB], [https://www.ebi.ac.uk/pdbsum/3ilr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ilr ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ilr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ilr OCA], [https://pdbe.org/3ilr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ilr RCSB], [https://www.ebi.ac.uk/pdbsum/3ilr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ilr ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q89YQ6_BACTN Q89YQ6_BACTN]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 24: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Bacillus thetaiotaomicron distaso 1912]]
+
[[Category: Bacteroides thetaiotaomicron]]
-
[[Category: Heparin lyase]]
+
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Cygler, M]]
+
[[Category: Cygler M]]
-
[[Category: Garron, M L]]
+
[[Category: Garron ML]]
-
[[Category: Shaya, D]]
+
[[Category: Shaya D]]
-
[[Category: Beta-jelly roll]]
+
-
[[Category: Heparin]]
+
-
[[Category: Lyase]]
+
-
[[Category: Polysaccharide lyase]]
+

Revision as of 14:10, 24 January 2024

Structure of Heparinase I from Bacteroides thetaiotaomicron in complex with tetrasaccharide product

PDB ID 3ilr

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3ilr"
Personal tools