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7bm6

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Current revision (12:30, 1 February 2024) (edit) (undo)
 
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<StructureSection load='7bm6' size='340' side='right'caption='[[7bm6]], [[Resolution|resolution]] 2.16&Aring;' scene=''>
<StructureSection load='7bm6' size='340' side='right'caption='[[7bm6]], [[Resolution|resolution]] 2.16&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[7bm6]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"cytophaga_drobachiensis"_barbeyron_et_al._1998 "cytophaga drobachiensis" barbeyron et al. 1998]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7BM6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7BM6 FirstGlance]. <br>
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<table><tr><td colspan='2'>[[7bm6]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Zobellia_galactanivorans Zobellia galactanivorans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7BM6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7BM6 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MAV:ALPHA-D-MANNOPYRANURONIC+ACID'>MAV</scene>, <scene name='pdbligand=MAW:4-DEOXY-ALPHA-L-ERYTHRO-HEX-4-ENOPYRANURONIC+ACID'>MAW</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.16&#8491;</td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">alyA3, zobellia_2624 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=63186 "Cytophaga drobachiensis" Barbeyron et al. 1998])</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MAV:ALPHA-D-MANNOPYRANURONIC+ACID'>MAV</scene>, <scene name='pdbligand=MAW:4-DEOXY-ALPHA-L-ERYTHRO-HEX-4-ENOPYRANURONIC+ACID'>MAW</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Poly(beta-D-mannuronate)_lyase Poly(beta-D-mannuronate) lyase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.2.3 4.2.2.3] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7bm6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7bm6 OCA], [https://pdbe.org/7bm6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7bm6 RCSB], [https://www.ebi.ac.uk/pdbsum/7bm6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7bm6 ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7bm6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7bm6 OCA], [https://pdbe.org/7bm6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7bm6 RCSB], [https://www.ebi.ac.uk/pdbsum/7bm6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7bm6 ProSAT]</span></td></tr>
</table>
</table>
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== Function ==
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[https://www.uniprot.org/uniprot/G0LCA3_ZOBGA G0LCA3_ZOBGA]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Cytophaga drobachiensis barbeyron et al. 1998]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Czjzek, M]]
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[[Category: Zobellia galactanivorans]]
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[[Category: Duff, N Le]]
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[[Category: Czjzek M]]
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[[Category: Jeudy, A]]
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[[Category: Jeudy A]]
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[[Category: Jouanneau, D]]
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[[Category: Jouanneau D]]
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[[Category: Roret, T]]
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[[Category: Le Duff N]]
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[[Category: Alginate lyase]]
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[[Category: Roret T]]
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[[Category: Delta-guluronate complex]]
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[[Category: Exo-acting marine enzyme]]
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[[Category: Family pl17]]
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[[Category: Hydrolase]]
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Current revision

Structure-function analysis of a new PL17 oligoalginate lyase from the marine bacterium Zobellia galactanivorans DsijT

PDB ID 7bm6

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