7p4g
From Proteopedia
(Difference between revisions)
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==Rabbit Muscle L-lactate dehydrogenase in complex with citrate== | ==Rabbit Muscle L-lactate dehydrogenase in complex with citrate== | ||
| - | <StructureSection load='7p4g' size='340' side='right'caption='[[7p4g]]' scene=''> | + | <StructureSection load='7p4g' size='340' side='right'caption='[[7p4g]], [[Resolution|resolution]] 2.60Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7P4G OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7P4G FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[7p4g]] is a 16 chain structure with sequence from [https://en.wikipedia.org/wiki/Oryctolagus_cuniculus Oryctolagus cuniculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7P4G OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7P4G FirstGlance]. <br> |
| - | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7p4g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7p4g OCA], [https://pdbe.org/7p4g PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7p4g RCSB], [https://www.ebi.ac.uk/pdbsum/7p4g PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7p4g ProSAT]</span></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6Å</td></tr> |
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7p4g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7p4g OCA], [https://pdbe.org/7p4g PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7p4g RCSB], [https://www.ebi.ac.uk/pdbsum/7p4g PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7p4g ProSAT]</span></td></tr> | ||
</table> | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/LDHA_RABIT LDHA_RABIT] | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | Among the functions exerted by eukaryotic lactate dehydrogenases, it is of importance the generation of lactate in muscles subjected to fatigue or to limited oxygen availability, with both these conditions triggering a decrease of cellular pH. However, the mutual dependence between lactate dehydrogenase (LDH) catalytic action and lactic acidosis is far from being fully understood. Here we show that the tetrameric LDH from rabbit skeletal muscle undergoes allosteric transitions as a function of pH, i.e. the enzyme obeys Michaelis-Menten kinetics at neutral or slightly alkaline pH values, and features sigmoidal kinetics at pH 6.5 or lower. Remarkably, we also report that a significant dissociation of tetrameric rabbit LDH occurs under acidic conditions, with pyruvate/NAD(+) or citrate counteracting this effect. Moreover, citrate strongly activates rabbit LDH, inducing the enzyme to feature Michaelis-Menten kinetics. Further, using primary rabbit skeletal muscle cells we tested the generation of lactate as a function of pH, and we detected a parallel decrease of cytosolic pH and secretion of lactate. Overall, our observations indicate that lactic acidosis is antagonized by LDH dissociation, the occurrence of which is regulated by citrate and by allosteric transitions of the enzyme induced by pyruvate. | ||
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| + | Allosteric transitions of rabbit skeletal muscle lactate dehydrogenase induced by pH-dependent dissociation of the tetrameric enzyme.,Iacovino LG, Rossi M, Di Stefano G, Rossi V, Binda C, Brigotti M, Tomaselli F, Pasti AP, Dal Piaz F, Cerini S, Hochkoeppler A Biochimie. 2022 Apr 7;199:23-35. doi: 10.1016/j.biochi.2022.03.008. PMID:35398441<ref>PMID:35398441</ref> | ||
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| + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| + | </div> | ||
| + | <div class="pdbe-citations 7p4g" style="background-color:#fffaf0;"></div> | ||
| + | |||
| + | ==See Also== | ||
| + | *[[Lactate dehydrogenase 3D structures|Lactate dehydrogenase 3D structures]] | ||
| + | == References == | ||
| + | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
| + | [[Category: Oryctolagus cuniculus]] | ||
[[Category: Binda C]] | [[Category: Binda C]] | ||
[[Category: Hochkoeppler A]] | [[Category: Hochkoeppler A]] | ||
[[Category: Iacovino LG]] | [[Category: Iacovino LG]] | ||
Current revision
Rabbit Muscle L-lactate dehydrogenase in complex with citrate
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