This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


7yxj

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:27, 1 February 2024) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='7yxj' size='340' side='right'caption='[[7yxj]], [[Resolution|resolution]] 2.45&Aring;' scene=''>
<StructureSection load='7yxj' size='340' side='right'caption='[[7yxj]], [[Resolution|resolution]] 2.45&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[7yxj]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7YXJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7YXJ FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[7yxj]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Drosophila_melanogaster Drosophila melanogaster]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7YXJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7YXJ FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=PD2:PYRIDINE-2,4-DICARBOXYLIC+ACID'>PD2</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.45&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CSO:S-HYDROXYCYSTEINE'>CSO</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CSO:S-HYDROXYCYSTEINE'>CSO</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=PD2:PYRIDINE-2,4-DICARBOXYLIC+ACID'>PD2</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7yxj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7yxj OCA], [https://pdbe.org/7yxj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7yxj RCSB], [https://www.ebi.ac.uk/pdbsum/7yxj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7yxj ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7yxj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7yxj OCA], [https://pdbe.org/7yxj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7yxj RCSB], [https://www.ebi.ac.uk/pdbsum/7yxj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7yxj ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q9VU77_DROME Q9VU77_DROME]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 21: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
 +
[[Category: Drosophila melanogaster]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Chowdhury, R]]
+
[[Category: Chowdhury R]]
-
[[Category: Schofield, C J]]
+
[[Category: Schofield CJ]]
-
[[Category: 2-oxoglutarate]]
+
-
[[Category: Cancer]]
+
-
[[Category: Development]]
+
-
[[Category: Developmentally regulated gtp binding protein]]
+
-
[[Category: Dimerisation]]
+
-
[[Category: Dioxygenase]]
+
-
[[Category: Drg1]]
+
-
[[Category: Drg2]]
+
-
[[Category: Dsbh]]
+
-
[[Category: Facial triad]]
+
-
[[Category: Helix-loop-helix-beta]]
+
-
[[Category: Hydroxylation]]
+
-
[[Category: Hypoxia]]
+
-
[[Category: Iron]]
+
-
[[Category: Jmjc]]
+
-
[[Category: Jmjc demethylase]]
+
-
[[Category: Jmjc domain]]
+
-
[[Category: Jmjc domain-containing protein 7]]
+
-
[[Category: Jmjc hydroxylase]]
+
-
[[Category: Jmjd7]]
+
-
[[Category: Kdm]]
+
-
[[Category: Lysyl hydroxylation]]
+
-
[[Category: Metal-binding]]
+
-
[[Category: Non-heme]]
+
-
[[Category: Nucleic acid- binding]]
+
-
[[Category: Oxidoreductase]]
+
-
[[Category: Oxygenase]]
+
-
[[Category: Post-translational modification]]
+
-
[[Category: Ptm]]
+
-
[[Category: Ribosome biogenesis]]
+
-
[[Category: Trafac gtpase]]
+
-
[[Category: Translation]]
+
-
[[Category: Translation factor]]
+

Current revision

Drosophila melanogaster JMJD7 (dmJMJD7) in complex with Mn and 2,4-PDCA

PDB ID 7yxj

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/7yxj"
Personal tools