This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1a58

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:27, 7 February 2024) (edit) (undo)
 
(15 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1a58.gif|left|200px]]
 
-
{{Structure
+
==CYCLOPHILIN FROM BRUGIA MALAYI==
-
|PDB= 1a58 |SIZE=350|CAPTION= <scene name='initialview01'>1a58</scene>, resolution 1.95&Aring;
+
<StructureSection load='1a58' size='340' side='right'caption='[[1a58]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND=
+
<table><tr><td colspan='2'>[[1a58]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Brugia_malayi Brugia malayi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1A58 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1A58 FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.95&#8491;</td></tr>
-
|GENE= CYCLOPHILIN ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=6279 Brugia malayi])
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1a58 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1a58 OCA], [https://pdbe.org/1a58 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1a58 RCSB], [https://www.ebi.ac.uk/pdbsum/1a58 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1a58 ProSAT]</span></td></tr>
-
}}
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/CYP1_BRUMA CYP1_BRUMA] PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a5/1a58_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1a58 ConSurf].
 +
<div style="clear:both"></div>
-
'''CYCLOPHILIN FROM BRUGIA MALAYI'''
+
==See Also==
-
 
+
*[[Cyclophilin 3D structures|Cyclophilin 3D structures]]
-
 
+
__TOC__
-
==Overview==
+
</StructureSection>
-
A structure of residues 1-177 of the cyclophilin domain of a large divergent cyclophilin from the filarial nematode parasite Brugia malayi has been crystallised and solved in two different crystal forms. The active site has a similar structure to that of human cyclophilin A. Two of the 13 residues important in forming the human cyclophilin A/cyclosporin A complex are altered in the B. malayi cyclophilin and explain the relatively poor inhibition of peptidyl prolyl isomerase activity by cyclosporin A.
+
-
 
+
-
==About this Structure==
+
-
1A58 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Brugia_malayi Brugia malayi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1A58 OCA].
+
-
 
+
-
==Reference==
+
-
The X-ray structure of a divergent cyclophilin from the nematode parasite Brugia malayi., Taylor P, Page AP, Kontopidis G, Husi H, Walkinshaw MD, FEBS Lett. 1998 Mar 27;425(2):361-6. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/9559680 9559680]
+
[[Category: Brugia malayi]]
[[Category: Brugia malayi]]
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
-
[[Category: Husi, H.]]
+
[[Category: Husi H]]
-
[[Category: Kontopidis, G.]]
+
[[Category: Kontopidis G]]
-
[[Category: Page, A P.]]
+
[[Category: Page AP]]
-
[[Category: Taylor, P.]]
+
[[Category: Taylor P]]
-
[[Category: Walkinshaw, M D.]]
+
[[Category: Walkinshaw MD]]
-
[[Category: isomerase]]
+
-
[[Category: ppiase]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 09:53:04 2008''
+

Current revision

CYCLOPHILIN FROM BRUGIA MALAYI

PDB ID 1a58

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools