1adi

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(New page: 200px<br /><applet load="1adi" size="450" color="white" frame="true" align="right" spinBox="true" caption="1adi, resolution 2.5&Aring;" /> '''STRUCTURE OF ADENYLOS...)
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[[Image:1adi.gif|left|200px]]<br /><applet load="1adi" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1adi, resolution 2.5&Aring;" />
 
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'''STRUCTURE OF ADENYLOSUCCINATE SYNTHETASE AT PH 6.5 AND 25 DEGREES CELSIUS'''<br />
 
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==Overview==
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==STRUCTURE OF ADENYLOSUCCINATE SYNTHETASE AT PH 6.5 AND 25 DEGREES CELSIUS==
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Crystal structures of unligated adenylosuccinate synthetase from, Escherichia coli in space groups P2(1) and P2(1)2(1)2(1) have been refined, to R-factors of 0.199 and 0.206 against data to 2.0 and 2.5 A, respectively. Bond lengths and angles deviate from expected values by, 0.011 A and 1.7 degrees for the P2(1) crystal form and by 0.015 A and 1.7, degrees for the P2(1)2(1)2(1) crystal form. The fold of the polypeptide, chain is dominated by a central beta-sheet, which is composed of nine, parallel strands and a tenth antiparallel strand. Extending off from this, central beta-sheet are four subdomains. The four subdomains contribute, loops of residues that are disordered or have high thermal parameters. At, least three of these loops (residues 42 to 52, 120 to 131 and 298 to 304), contribute essential residues to the putative active site of the, synthetase. In the absence of ligands, much of the active site of the, synthetase exists in an ill-defined conformational state. Two, nearly, independent regions contribute residues to the interface between, polypeptide chains of the synthetase dimer. A pair of helices (H4 and H5), interact with their symmetry-equivalent mates by way of residues that are, not conserved amongst the known sequences of the synthetase. The second, interface region involves conserved residues belonging to structural, elements that connect strands of the central beta-sheet. Residues, putatively involved in the binding of IMP lie at or near the interface, between polypeptide chains of the dimer. Of the four sequence elements, putatively common to all GTP hydrolases, the synthetase has only the, guanine recognition element and a glycine-rich loop (P-loop). Although the, base recognition element is essentially identical with those of the p21, ras and G alpha proteins, the P-loop of the synthetase is extended in size, relative to the P-loops of other GTP hydrolases. The P-loop has two acid, residues (Asp13 and Glu14), which are found in the P-loops of only the, synthetase family. Glu14 may be involved in the stabilization of the, enlarged P-loop of the synthetase, whereas Asp13 may play a role in, catalysis and in the coordination of Mg2+. The structural elements of the, p21 ras and G alpha proteins responsible for binding Mg2+ are either, absent from the synthetase or unavailable for the coordination of metal, cations.
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<StructureSection load='1adi' size='340' side='right'caption='[[1adi]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1adi]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ADI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ADI FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1adi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1adi OCA], [https://pdbe.org/1adi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1adi RCSB], [https://www.ebi.ac.uk/pdbsum/1adi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1adi ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/PURA_ECOLI PURA_ECOLI] Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP (By similarity).[HAMAP-Rule:MF_00011]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ad/1adi_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1adi ConSurf].
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<div style="clear:both"></div>
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==About this Structure==
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==See Also==
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1ADI is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Active as [http://en.wikipedia.org/wiki/Adenylosuccinate_synthase Adenylosuccinate synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.3.4.4 6.3.4.4] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1ADI OCA].
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*[[Adenylosuccinate synthetase 3D structures|Adenylosuccinate synthetase 3D structures]]
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__TOC__
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==Reference==
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</StructureSection>
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Refined crystal structures of unligated adenylosuccinate synthetase from Escherichia coli., Silva MM, Poland BW, Hoffman CR, Fromm HJ, Honzatko RB, J Mol Biol. 1995 Dec 1;254(3):431-46. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=7490761 7490761]
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[[Category: Adenylosuccinate synthase]]
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[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
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[[Category: Single protein]]
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[[Category: Large Structures]]
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[[Category: Fromm, H.J.]]
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[[Category: Fromm HJ]]
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[[Category: Hoffman, C.M.]]
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[[Category: Hoffman CM]]
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[[Category: Honzatko, R.B.]]
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[[Category: Honzatko RB]]
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[[Category: Poland, B.W.]]
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[[Category: Poland BW]]
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[[Category: Silva, M.M.]]
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[[Category: Silva MM]]
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[[Category: gtp-hydrolyzing enzyme]]
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[[Category: ligase]]
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[[Category: purine nucleotide biosynthesis]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 10:46:29 2007''
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Current revision

STRUCTURE OF ADENYLOSUCCINATE SYNTHETASE AT PH 6.5 AND 25 DEGREES CELSIUS

PDB ID 1adi

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