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1cyf

From Proteopedia

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(New page: 200px<br /><applet load="1cyf" size="450" color="white" frame="true" align="right" spinBox="true" caption="1cyf, resolution 2.35&Aring;" /> '''IDENTIFYING THE PHYS...)
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[[Image:1cyf.jpg|left|200px]]<br /><applet load="1cyf" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1cyf, resolution 2.35&Aring;" />
 
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'''IDENTIFYING THE PHYSIOLOGICAL ELECTRON TRANSFER SITE OF CYTOCHROME C PEROXIDASE BY STRUCTURE-BASED ENGINEERING'''<br />
 
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==Overview==
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==IDENTIFYING THE PHYSIOLOGICAL ELECTRON TRANSFER SITE OF CYTOCHROME C PEROXIDASE BY STRUCTURE-BASED ENGINEERING==
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A technique was developed to evaluate whether electron transfer (ET), complexes formed in solution by the cloned cytochrome c peroxidase, [CcP(MI)] and cytochromes c from yeast (yCc) and horse (hCc) are, structurally similar to those seen in the respective crystal structures., Site-directed mutagenesis was used to convert the sole Cys of the parent, enzyme (Cys 128) to Ala, and a Cys residue was introduced at position 193, of CcP(MI), the point of closest contact between CcP(MI) and yCc in the, crystal structure. Cys 193 was then modified with a bulky sulfhydryl, reagent, 3-(N-maleimidylpropionyl)-biocytin (MPB), to prevent yCc from, binding at the site seen in the crystal. The MPB modification has no, effect on overall enzyme structure but causes 20-100-fold decreases in, transient and steady-state ET reaction rates with yCc. The MPB, modification causes only 2-3-fold decreases in ET reaction rates with hCc, however. This differential effect is predicted by modeling studies based, on the crystal structures and indicates that solution phase ET complexes, closely resemble the crystalline complexes. The low rate of catalysis of, the MPB-enzyme was constant for yCc in buffers of 20-160 mM ionic, strength. This indicates that the low affinity complex formed between, CcP(MI) and yCc at low ionic strength is not reactive in ET.
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<StructureSection load='1cyf' size='340' side='right'caption='[[1cyf]], [[Resolution|resolution]] 2.35&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1cyf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1CYF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1CYF FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.35&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1cyf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1cyf OCA], [https://pdbe.org/1cyf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1cyf RCSB], [https://www.ebi.ac.uk/pdbsum/1cyf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1cyf ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/CCPR_YEAST CCPR_YEAST] Destroys radicals which are normally produced within the cells and which are toxic to biological systems.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cy/1cyf_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1cyf ConSurf].
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<div style="clear:both"></div>
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==About this Structure==
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==See Also==
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1CYF is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae] with HEM as [http://en.wikipedia.org/wiki/ligand ligand]. Active as [http://en.wikipedia.org/wiki/Cytochrome-c_peroxidase Cytochrome-c peroxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.11.1.5 1.11.1.5] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1CYF OCA].
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*[[Cytochrome c peroxidase 3D structures|Cytochrome c peroxidase 3D structures]]
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__TOC__
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==Reference==
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</StructureSection>
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Identifying the physiological electron transfer site of cytochrome c peroxidase by structure-based engineering., Miller MA, Geren L, Han GW, Saunders A, Beasley J, Pielak GJ, Durham B, Millett F, Kraut J, Biochemistry. 1996 Jan 23;35(3):667-73. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=8547245 8547245]
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[[Category: Large Structures]]
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[[Category: Cytochrome-c peroxidase]]
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[[Category: Saccharomyces cerevisiae]]
[[Category: Saccharomyces cerevisiae]]
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[[Category: Single protein]]
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[[Category: Han GW]]
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[[Category: Han, G.W.]]
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[[Category: Kraut J]]
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[[Category: Kraut, J.]]
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[[Category: Miller MA]]
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[[Category: Miller, M.A.]]
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[[Category: HEM]]
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[[Category: oxidoreductase (h2o2(a))]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 12:51:07 2007''
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IDENTIFYING THE PHYSIOLOGICAL ELECTRON TRANSFER SITE OF CYTOCHROME C PEROXIDASE BY STRUCTURE-BASED ENGINEERING

PDB ID 1cyf

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