This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1d4z

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:49, 7 February 2024) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1d4z.png|left|200px]]
 
-
<!--
+
==CRYSTAL STRUCTURE OF CHEY-95IV, A HYPERACTIVE CHEY MUTANT==
-
The line below this paragraph, containing "STRUCTURE_1d4z", creates the "Structure Box" on the page.
+
<StructureSection load='1d4z' size='340' side='right'caption='[[1d4z]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1d4z]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1D4Z OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1D4Z FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
{{STRUCTURE_1d4z| PDB=1d4z | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1d4z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1d4z OCA], [https://pdbe.org/1d4z PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1d4z RCSB], [https://www.ebi.ac.uk/pdbsum/1d4z PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1d4z ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/CHEY_ECOLI CHEY_ECOLI] Involved in the transmission of sensory signals from the chemoreceptors to the flagellar motors. In its active (phosphorylated or acetylated) form, CheY exhibits enhanced binding to a switch component, FliM, at the flagellar motor which induces a change from counterclockwise to clockwise flagellar rotation. Overexpression of CheY in association with MotA and MotB improves motility of a ycgR disruption, suggesting there is an interaction (direct or indirect) between the c-di-GMP-binding flagellar brake protein and the flagellar stator.<ref>PMID:20346719</ref>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d4/1d4z_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1d4z ConSurf].
 +
<div style="clear:both"></div>
-
===CRYSTAL STRUCTURE OF CHEY-95IV, A HYPERACTIVE CHEY MUTANT===
+
==See Also==
-
 
+
*[[Chemotaxis protein 3D structures|Chemotaxis protein 3D structures]]
-
 
+
== References ==
-
<!--
+
<references/>
-
The line below this paragraph, {{ABSTRACT_PUBMED_10748173}}, adds the Publication Abstract to the page
+
__TOC__
-
(as it appears on PubMed at http://www.pubmed.gov), where 10748173 is the PubMed ID number.
+
</StructureSection>
-
-->
+
-
{{ABSTRACT_PUBMED_10748173}}
+
-
 
+
-
==About this Structure==
+
-
1D4Z is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1D4Z OCA].
+
-
 
+
-
==Reference==
+
-
Correlated switch binding and signaling in bacterial chemotaxis., Schuster M, Zhao R, Bourret RB, Collins EJ, J Biol Chem. 2000 Jun 30;275(26):19752-8. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/10748173 10748173]
+
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
-
[[Category: Bourret, R B.]]
+
[[Category: Bourret RB]]
-
[[Category: Collins, E J.]]
+
[[Category: Collins EJ]]
-
[[Category: Schuster, M.]]
+
[[Category: Schuster M]]
-
[[Category: Zhao, R.]]
+
[[Category: Zhao R]]
-
[[Category: Bacterial chemotaxis]]
+
-
[[Category: Response regulator]]
+
-
[[Category: Signaling protein]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jun 30 22:25:57 2008''
+

Current revision

CRYSTAL STRUCTURE OF CHEY-95IV, A HYPERACTIVE CHEY MUTANT

PDB ID 1d4z

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1d4z"
Personal tools