This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1dv3

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "1dv3" [edit=sysop:move=sysop])
Current revision (06:59, 7 February 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1dv3.png|left|200px]]
 
-
{{STRUCTURE_1dv3| PDB=1dv3 | SCENE= }}
+
==PHOTOSYNTHETIC REACTION CENTER FROM RHODOBACTER SPHAEROIDES IN THE CHARGE-SEPARATED D+QAQB-STATE WITH THE PROTON TRANSFER INHIBITOR CD2+==
-
 
+
<StructureSection load='1dv3' size='340' side='right'caption='[[1dv3]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
-
===PHOTOSYNTHETIC REACTION CENTER FROM RHODOBACTER SPHAEROIDES IN THE CHARGE-SEPARATED D+QAQB-STATE WITH THE PROTON TRANSFER INHIBITOR CD2+===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[1dv3]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Cereibacter_sphaeroides Cereibacter sphaeroides]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DV3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DV3 FirstGlance]. <br>
-
{{ABSTRACT_PUBMED_10677497}}
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
-
 
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BCL:BACTERIOCHLOROPHYLL+A'>BCL</scene>, <scene name='pdbligand=BPH:BACTERIOPHEOPHYTIN+A'>BPH</scene>, <scene name='pdbligand=CD:CADMIUM+ION'>CD</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=LDA:LAURYL+DIMETHYLAMINE-N-OXIDE'>LDA</scene>, <scene name='pdbligand=U10:UBIQUINONE-10'>U10</scene></td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1dv3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dv3 OCA], [https://pdbe.org/1dv3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1dv3 RCSB], [https://www.ebi.ac.uk/pdbsum/1dv3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1dv3 ProSAT]</span></td></tr>
-
[[1dv3]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodobacter_sphaeroides Rhodobacter sphaeroides]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DV3 OCA].
+
</table>
-
 
+
== Function ==
-
==Reference==
+
[https://www.uniprot.org/uniprot/RCEL_CERSP RCEL_CERSP] The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.
-
<ref group="xtra">PMID:010677497</ref><references group="xtra"/>
+
== Evolutionary Conservation ==
-
[[Category: Rhodobacter sphaeroides]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Abresch, E C.]]
+
Check<jmol>
-
[[Category: Axelrod, H L.]]
+
<jmolCheckbox>
-
[[Category: Feher, G.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dv/1dv3_consurf.spt"</scriptWhenChecked>
-
[[Category: Okamura, M Y.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Paddock, M L.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Bacterial photosynthesis]]
+
</jmolCheckbox>
-
[[Category: Cation binding]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1dv3 ConSurf].
-
[[Category: Integral membrane protein]]
+
<div style="clear:both"></div>
-
[[Category: Metal ion binding]]
+
__TOC__
-
[[Category: Photosynthesis]]
+
</StructureSection>
-
[[Category: Proton transfer]]
+
[[Category: Cereibacter sphaeroides]]
-
[[Category: Rhodobacter sphaeroide]]
+
[[Category: Large Structures]]
 +
[[Category: Abresch EC]]
 +
[[Category: Axelrod HL]]
 +
[[Category: Feher G]]
 +
[[Category: Okamura MY]]
 +
[[Category: Paddock ML]]

Current revision

PHOTOSYNTHETIC REACTION CENTER FROM RHODOBACTER SPHAEROIDES IN THE CHARGE-SEPARATED D+QAQB-STATE WITH THE PROTON TRANSFER INHIBITOR CD2+

PDB ID 1dv3

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1dv3"
Personal tools