This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
1erz
From Proteopedia
(Difference between revisions)
| (9 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:1erz.png|left|200px]] | ||
| - | + | ==CRYSTAL STRUCTURE OF N-CARBAMYL-D-AMINO ACID AMIDOHYDROLASE WITH A NOVEL CATALYTIC FRAMEWORK COMMON TO AMIDOHYDROLASES== | |
| - | + | <StructureSection load='1erz' size='340' side='right'caption='[[1erz]], [[Resolution|resolution]] 1.70Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[1erz]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrobacterium_sp._KNK712 Agrobacterium sp. KNK712]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ERZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ERZ FirstGlance]. <br> | |
| - | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7Å</td></tr> | |
| - | == | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1erz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1erz OCA], [https://pdbe.org/1erz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1erz RCSB], [https://www.ebi.ac.uk/pdbsum/1erz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1erz ProSAT]</span></td></tr> |
| - | [[1erz]] is a 2 chain structure with sequence from [ | + | </table> |
| - | + | == Function == | |
| - | == | + | [https://www.uniprot.org/uniprot/DCAS_AGRSK DCAS_AGRSK] The enzyme catalyzes the hydrolysis of N-carbamoyl-D-amino acids to the corresponding which are useful intermediates in the preparation of beta-lactam antibiotics. Industrial production of beta-lactam antibiotics is now being developed using this enzyme. |
| - | < | + | == Evolutionary Conservation == |
| - | [[Category: Agrobacterium sp.]] | + | [[Image:Consurf_key_small.gif|200px|right]] |
| - | [[Category: | + | Check<jmol> |
| - | [[Category: Hasegawa | + | <jmolCheckbox> |
| - | [[Category: Ikenaka | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/er/1erz_consurf.spt"</scriptWhenChecked> |
| - | [[Category: Kumasaka | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| - | [[Category: Nakai | + | <text>to colour the structure by Evolutionary Conservation</text> |
| - | [[Category: Nanba | + | </jmolCheckbox> |
| - | [[Category: Sato | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1erz ConSurf]. |
| - | [[Category: Takahashi | + | <div style="clear:both"></div> |
| - | [[Category: Tsukihara | + | __TOC__ |
| - | [[Category: Ueki | + | </StructureSection> |
| - | [[Category: Yamamoto | + | [[Category: Agrobacterium sp. KNK712]] |
| - | [[Category: Yamashita | + | [[Category: Large Structures]] |
| - | + | [[Category: Hasegawa T]] | |
| - | + | [[Category: Ikenaka Y]] | |
| + | [[Category: Kumasaka T]] | ||
| + | [[Category: Nakai T]] | ||
| + | [[Category: Nanba H]] | ||
| + | [[Category: Sato M]] | ||
| + | [[Category: Takahashi S]] | ||
| + | [[Category: Tsukihara T]] | ||
| + | [[Category: Ueki T]] | ||
| + | [[Category: Yamamoto M]] | ||
| + | [[Category: Yamashita E]] | ||
Current revision
CRYSTAL STRUCTURE OF N-CARBAMYL-D-AMINO ACID AMIDOHYDROLASE WITH A NOVEL CATALYTIC FRAMEWORK COMMON TO AMIDOHYDROLASES
| |||||||||||
Categories: Agrobacterium sp. KNK712 | Large Structures | Hasegawa T | Ikenaka Y | Kumasaka T | Nakai T | Nanba H | Sato M | Takahashi S | Tsukihara T | Ueki T | Yamamoto M | Yamashita E
