This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1ew0

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:07, 7 February 2024) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1ew0.png|left|200px]]
 
-
<!--
+
==CRYSTAL STRUCTURE ANALYSIS OF THE SENSOR DOMAIN OF RMFIXL(FERROUS FORM)==
-
The line below this paragraph, containing "STRUCTURE_1ew0", creates the "Structure Box" on the page.
+
<StructureSection load='1ew0' size='340' side='right'caption='[[1ew0]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1ew0]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Sinorhizobium_meliloti Sinorhizobium meliloti]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1EW0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1EW0 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.4&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
-
{{STRUCTURE_1ew0| PDB=1ew0 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ew0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ew0 OCA], [https://pdbe.org/1ew0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ew0 RCSB], [https://www.ebi.ac.uk/pdbsum/1ew0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ew0 ProSAT]</span></td></tr>
-
 
+
</table>
-
===CRYSTAL STRUCTURE ANALYSIS OF THE SENSOR DOMAIN OF RMFIXL(FERROUS FORM)===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/FIXL_RHIME FIXL_RHIME] Putative oxygen sensor; modulates the activity of FixJ, a transcriptional activator of nitrogen fixation fixK gene. FixL probably acts as a kinase that phosphorylates FixJ.
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_10926518}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 10926518 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ew/1ew0_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_10926518}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
1EW0 is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Sinorhizobium_meliloti Sinorhizobium meliloti]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1EW0 OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ew0 ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
__TOC__
-
<ref group="xtra">PMID:10926518</ref><ref group="xtra">PMID:10329771</ref><ref group="xtra">PMID:10438488</ref><references group="xtra"/>
+
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Sinorhizobium meliloti]]
[[Category: Sinorhizobium meliloti]]
-
[[Category: Adachi, S.]]
+
[[Category: Adachi S]]
-
[[Category: Iizuka, T.]]
+
[[Category: Iizuka T]]
-
[[Category: Miyatake, H.]]
+
[[Category: Miyatake H]]
-
[[Category: Mukai, M.]]
+
[[Category: Mukai M]]
-
[[Category: Nakamura, H.]]
+
[[Category: Nakamura H]]
-
[[Category: Nakamura, K.]]
+
[[Category: Nakamura K]]
-
[[Category: Park, S Y.]]
+
[[Category: Park S-Y]]
-
[[Category: Shiro, Y.]]
+
[[Category: Shiro Y]]
-
[[Category: Tamura, K.]]
+
[[Category: Tamura K]]
-
[[Category: Tsuchiya, T.]]
+
[[Category: Tsuchiya T]]
-
[[Category: Heme protein]]
+
-
[[Category: Histidine kinase]]
+
-
[[Category: Oxygen sensor]]
+
-
[[Category: Rhizobium meliloti]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 10:53:01 2009''
+

Current revision

CRYSTAL STRUCTURE ANALYSIS OF THE SENSOR DOMAIN OF RMFIXL(FERROUS FORM)

PDB ID 1ew0

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1ew0"
Personal tools