This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1f4p

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "1f4p" [edit=sysop:move=sysop])
Current revision (07:10, 7 February 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1f4p.png|left|200px]]
 
-
<!--
+
==Y98W FLAVODOXIN MUTANT 1.5A (D. VULGARIS)==
-
The line below this paragraph, containing "STRUCTURE_1f4p", creates the "Structure Box" on the page.
+
<StructureSection load='1f4p' size='340' side='right'caption='[[1f4p]], [[Resolution|resolution]] 1.30&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1f4p]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Desulfovibrio_vulgaris Desulfovibrio vulgaris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1F4P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1F4P FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.3&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene></td></tr>
-
{{STRUCTURE_1f4p| PDB=1f4p | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1f4p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1f4p OCA], [https://pdbe.org/1f4p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1f4p RCSB], [https://www.ebi.ac.uk/pdbsum/1f4p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1f4p ProSAT]</span></td></tr>
-
 
+
</table>
-
===Y98W FLAVODOXIN MUTANT 1.5A (D. VULGARIS)===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/FLAV_DESVH FLAV_DESVH] Low-potential electron donor to a number of redox enzymes.
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_11264581}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 11264581 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/f4/1f4p_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_11264581}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
[[1f4p]] is a 1 chain structure of [[Flavodoxin]] with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_vulgaris Desulfovibrio vulgaris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1F4P OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1f4p ConSurf].
 +
<div style="clear:both"></div>
==See Also==
==See Also==
-
*[[Flavodoxin]]
+
*[[Flavodoxin 3D structures|Flavodoxin 3D structures]]
-
 
+
__TOC__
-
==Reference==
+
</StructureSection>
-
<ref group="xtra">PMID:11264581</ref><references group="xtra"/>
+
[[Category: Desulfovibrio vulgaris]]
[[Category: Desulfovibrio vulgaris]]
-
[[Category: Reynolds, R A.]]
+
[[Category: Large Structures]]
-
[[Category: Watenpaugh, K D.]]
+
[[Category: Reynolds RA]]
-
[[Category: Watt, W.]]
+
[[Category: Watenpaugh KD]]
-
[[Category: 3d-strcture]]
+
[[Category: Watt W]]
-
[[Category: Anisotropic refinement]]
+
-
[[Category: Electron transport]]
+
-
[[Category: Flavoprotein]]
+
-
[[Category: Fmn]]
+
-
[[Category: Redox protein]]
+

Current revision

Y98W FLAVODOXIN MUTANT 1.5A (D. VULGARIS)

PDB ID 1f4p

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1f4p"
Personal tools