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1f8y

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{{Seed}}
 
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[[Image:1f8y.png|left|200px]]
 
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==CRYSTAL STRUCTURE ANALYSIS OF NUCLEOSIDE 2-DEOXYRIBOSYLTRANSFERASE COMPLEXED WITH 5-METHYL-2'-DEOXYPSEUDOURIDINE==
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The line below this paragraph, containing "STRUCTURE_1f8y", creates the "Structure Box" on the page.
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<StructureSection load='1f8y' size='340' side='right'caption='[[1f8y]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1f8y]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Lactobacillus_leichmannii Lactobacillus leichmannii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1F8Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1F8Y FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=5MD:5-METHYL-2-DEOXYPSEUDOURIDINE'>5MD</scene></td></tr>
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{{STRUCTURE_1f8y| PDB=1f8y | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1f8y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1f8y OCA], [https://pdbe.org/1f8y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1f8y RCSB], [https://www.ebi.ac.uk/pdbsum/1f8y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1f8y ProSAT]</span></td></tr>
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</table>
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===CRYSTAL STRUCTURE ANALYSIS OF NUCLEOSIDE 2-DEOXYRIBOSYLTRANSFERASE COMPLEXED WITH 5-METHYL-2'-DEOXYPSEUDOURIDINE===
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== Function ==
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[https://www.uniprot.org/uniprot/NTD_LACLE NTD_LACLE] Catalyzes the cleavage of the glycosidic bond of 2'-deoxyribonucleosides and the transfer of the deoxyribosyl moiety to an acceptor purine or pyrimidine base.<ref>PMID:7797550</ref> <ref>PMID:8805514</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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The line below this paragraph, {{ABSTRACT_PUBMED_8805514}}, adds the Publication Abstract to the page
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Check<jmol>
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(as it appears on PubMed at http://www.pubmed.gov), where 8805514 is the PubMed ID number.
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/f8/1f8y_consurf.spt"</scriptWhenChecked>
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{{ABSTRACT_PUBMED_8805514}}
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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==About this Structure==
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</jmolCheckbox>
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1F8Y is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Lactobacillus_leichmannii Lactobacillus leichmannii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1F8Y OCA].
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1f8y ConSurf].
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<div style="clear:both"></div>
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==Reference==
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== References ==
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<ref group="xtra">PMID:8805514</ref><references group="xtra"/>
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<references/>
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__TOC__
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</StructureSection>
[[Category: Lactobacillus leichmannii]]
[[Category: Lactobacillus leichmannii]]
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[[Category: Nucleoside deoxyribosyltransferase]]
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[[Category: Large Structures]]
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[[Category: Armstrong, S R.]]
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[[Category: Armstrong SR]]
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[[Category: Cook, W J.]]
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[[Category: Cook WJ]]
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[[Category: Ealick, S E.]]
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[[Category: Ealick SE]]
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[[Category: Short, S A.]]
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[[Category: Short SA]]
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[[Category: Active site]]
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[[Category: Alpha/beta protein]]
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[[Category: Biocatalyst]]
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[[Category: Nucleoside]]
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[[Category: X-ray crystallography]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 05:20:27 2009''
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Current revision

CRYSTAL STRUCTURE ANALYSIS OF NUCLEOSIDE 2-DEOXYRIBOSYLTRANSFERASE COMPLEXED WITH 5-METHYL-2'-DEOXYPSEUDOURIDINE

PDB ID 1f8y

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