This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1g3w

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:22, 7 February 2024) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1g3w.png|left|200px]]
 
-
<!--
+
==CD-CYS102SER DTXR==
-
The line below this paragraph, containing "STRUCTURE_1g3w", creates the "Structure Box" on the page.
+
<StructureSection load='1g3w' size='340' side='right'caption='[[1g3w]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1g3w]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Corynebacterium_diphtheriae Corynebacterium diphtheriae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1G3W OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1G3W FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CD:CADMIUM+ION'>CD</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
{{STRUCTURE_1g3w| PDB=1g3w | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1g3w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1g3w OCA], [https://pdbe.org/1g3w PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1g3w RCSB], [https://www.ebi.ac.uk/pdbsum/1g3w PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1g3w ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/DTXR_CORDI DTXR_CORDI] Iron-binding repressor of the dipheteria toxin gene expression. May serve as a global regulator of gene expression. Represses ripA under iron excess.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/g3/1g3w_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1g3w ConSurf].
 +
<div style="clear:both"></div>
-
===CD-CYS102SER DTXR===
+
==See Also==
-
 
+
*[[Diphtheria toxin repressor|Diphtheria toxin repressor]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_11320302}}, adds the Publication Abstract to the page
+
-
(as it appears on PubMed at http://www.pubmed.gov), where 11320302 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_11320302}}
+
-
 
+
-
==About this Structure==
+
-
1G3W is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Corynebacterium_diphtheriae Corynebacterium diphtheriae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1G3W OCA].
+
-
 
+
-
==Reference==
+
-
Structures of three diphtheria toxin repressor (DtxR) variants with decreased repressor activity., Pohl E, Goranson-Siekierke J, Choi MK, Roosild T, Holmes RK, Hol WG, Acta Crystallogr D Biol Crystallogr. 2001 May;57(Pt 5):619-27. Epub 2001, Apr 24. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/11320302 11320302]
+
[[Category: Corynebacterium diphtheriae]]
[[Category: Corynebacterium diphtheriae]]
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
-
[[Category: Goranson-Siekierke, J.]]
+
[[Category: Goranson-Siekierke J]]
-
[[Category: Hol, W G.J.]]
+
[[Category: Hol WGJ]]
-
[[Category: Holmes, R K.]]
+
[[Category: Holmes RK]]
-
[[Category: Pohl, E.]]
+
[[Category: Pohl E]]
-
[[Category: Dna binding protein]]
+
-
[[Category: Iron binding protein]]
+
-
[[Category: Iron dependent regulator]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 1 04:22:29 2008''
+

Current revision

CD-CYS102SER DTXR

PDB ID 1g3w

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1g3w"
Personal tools