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1ji5

From Proteopedia

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{{Seed}}
 
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[[Image:1ji5.png|left|200px]]
 
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<!--
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==Dlp-1 from bacillus anthracis==
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The line below this paragraph, containing "STRUCTURE_1ji5", creates the "Structure Box" on the page.
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<StructureSection load='1ji5' size='340' side='right'caption='[[1ji5]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1ji5]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_anthracis Bacillus anthracis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JI5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1JI5 FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene></td></tr>
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{{STRUCTURE_1ji5| PDB=1ji5 | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ji5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ji5 OCA], [https://pdbe.org/1ji5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ji5 RCSB], [https://www.ebi.ac.uk/pdbsum/1ji5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ji5 ProSAT]</span></td></tr>
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</table>
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===Dlp-1 from bacillus anthracis===
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== Function ==
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[https://www.uniprot.org/uniprot/DPS2_BACAN DPS2_BACAN] Protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral. One hydrogen peroxide oxidizes two Fe(2+) ions, which prevents hydroxyl radical production by the Fenton reaction (By similarity). It is capable of binding and sequestering Fe(2+) ion. Does not bind DNA.
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== Evolutionary Conservation ==
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<!--
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[[Image:Consurf_key_small.gif|200px|right]]
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The line below this paragraph, {{ABSTRACT_PUBMED_11836250}}, adds the Publication Abstract to the page
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Check<jmol>
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(as it appears on PubMed at http://www.pubmed.gov), where 11836250 is the PubMed ID number.
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ji/1ji5_consurf.spt"</scriptWhenChecked>
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{{ABSTRACT_PUBMED_11836250}}
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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==About this Structure==
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</jmolCheckbox>
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1JI5 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_anthracis Bacillus anthracis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JI5 OCA].
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ji5 ConSurf].
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<div style="clear:both"></div>
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==Reference==
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__TOC__
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Structure of two iron-binding proteins from Bacillus anthracis., Papinutto E, Dundon WG, Pitulis N, Battistutta R, Montecucco C, Zanotti G, J Biol Chem. 2002 Apr 26;277(17):15093-8. Epub 2002 Feb 8. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/11836250 11836250]
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</StructureSection>
[[Category: Bacillus anthracis]]
[[Category: Bacillus anthracis]]
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[[Category: Single protein]]
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[[Category: Large Structures]]
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[[Category: Battistutta, R.]]
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[[Category: Battistutta R]]
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[[Category: Dundon, W G.]]
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[[Category: Dundon WG]]
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[[Category: Montecucco, C.]]
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[[Category: Montecucco C]]
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[[Category: Papinutto, E.]]
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[[Category: Papinutto E]]
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[[Category: Pitulis, N.]]
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[[Category: Pitulis N]]
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[[Category: Zanotti, G.]]
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[[Category: Zanotti G]]
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[[Category: Dodecamer]]
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[[Category: Four-helix bundle]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 1 20:16:56 2008''
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Current revision

Dlp-1 from bacillus anthracis

PDB ID 1ji5

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