This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4ck0

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:47, 7 February 2024) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
==Crystal structure of the integral membrane diacylglycerol kinase - form 2==
==Crystal structure of the integral membrane diacylglycerol kinase - form 2==
-
<StructureSection load='4ck0' size='340' side='right' caption='[[4ck0]], [[Resolution|resolution]] 2.92&Aring;' scene=''>
+
<StructureSection load='4ck0' size='340' side='right'caption='[[4ck0]], [[Resolution|resolution]] 2.92&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4ck0]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4CK0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4CK0 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4ck0]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4CK0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4CK0 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACP:PHOSPHOMETHYLPHOSPHONIC+ACID+ADENYLATE+ESTER'>ACP</scene>, <scene name='pdbligand=OLC:(2R)-2,3-DIHYDROXYPROPYL+(9Z)-OCTADEC-9-ENOATE'>OLC</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.924&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4cjz|4cjz]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACP:PHOSPHOMETHYLPHOSPHONIC+ACID+ADENYLATE+ESTER'>ACP</scene>, <scene name='pdbligand=OLC:(2R)-2,3-DIHYDROXYPROPYL+(9Z)-OCTADEC-9-ENOATE'>OLC</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Diacylglycerol_kinase Diacylglycerol kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.107 2.7.1.107] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ck0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ck0 OCA], [https://pdbe.org/4ck0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ck0 RCSB], [https://www.ebi.ac.uk/pdbsum/4ck0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ck0 ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ck0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ck0 OCA], [http://pdbe.org/4ck0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4ck0 RCSB], [http://www.ebi.ac.uk/pdbsum/4ck0 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4ck0 ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/KDGL_ECOLI KDGL_ECOLI]] Recycling of diacylglycerol produced during the turnover of membrane phospholipid.
+
[https://www.uniprot.org/uniprot/KDGL_ECOLI KDGL_ECOLI] Recycling of diacylglycerol produced during the turnover of membrane phospholipid.
==See Also==
==See Also==
-
*[[Diacylglycerol kinase|Diacylglycerol kinase]]
+
*[[Diacylglycerol kinase 3D structures|Diacylglycerol kinase 3D structures]]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Diacylglycerol kinase]]
+
[[Category: Escherichia coli K-12]]
-
[[Category: Aragao, D]]
+
[[Category: Large Structures]]
-
[[Category: Caffrey, M]]
+
[[Category: Aragao D]]
-
[[Category: Li, D]]
+
[[Category: Caffrey M]]
-
[[Category: Lyons, J A]]
+
[[Category: Li D]]
-
[[Category: Vogeley, L]]
+
[[Category: Lyons JA]]
-
[[Category: 9 mag]]
+
[[Category: Vogeley L]]
-
[[Category: Beta- gama-methyleneadenosine 5'-triphosphate]]
+
-
[[Category: Dgka]]
+
-
[[Category: In meso crystallisation]]
+
-
[[Category: Lcp]]
+
-
[[Category: Lipid cubic phase]]
+
-
[[Category: Lipid metabolism]]
+
-
[[Category: Lipidic mesophase]]
+
-
[[Category: Membrane protein]]
+
-
[[Category: Microcrystal]]
+
-
[[Category: Monoacylglycerol]]
+
-
[[Category: Monoolein]]
+
-
[[Category: Soaking]]
+
-
[[Category: Thermostable mutant]]
+
-
[[Category: Transferase]]
+

Current revision

Crystal structure of the integral membrane diacylglycerol kinase - form 2

PDB ID 4ck0

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools