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3j9l

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{{Large structure}}
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==Structure of Dark apoptosome from Drosophila melanogaster==
==Structure of Dark apoptosome from Drosophila melanogaster==
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<StructureSection load='3j9l' size='340' side='right' caption='[[3j9l]], [[Resolution|resolution]] 4.00&Aring;' scene=''>
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<SX load='3j9l' size='340' side='right' viewer='molstar' caption='[[3j9l]], [[Resolution|resolution]] 4.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[3j9l]] is a 16 chain structure with sequence from [http://en.wikipedia.org/wiki/Drosophila_melanogaster Drosophila melanogaster]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3J9L OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3J9L FirstGlance]. <br>
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<table><tr><td colspan='2'>[[3j9l]] is a 16 chain structure with sequence from [https://en.wikipedia.org/wiki/Drosophila_melanogaster Drosophila melanogaster]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3J9L OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3J9L FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DTP:2-DEOXYADENOSINE+5-TRIPHOSPHATE'>DTP</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 4&#8491;</td></tr>
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNK:UNKNOWN'>UNK</scene></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DTP:2-DEOXYADENOSINE+5-TRIPHOSPHATE'>DTP</scene></td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3j9k|3j9k]]</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3j9l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3j9l OCA], [https://pdbe.org/3j9l PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3j9l RCSB], [https://www.ebi.ac.uk/pdbsum/3j9l PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3j9l ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3j9l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3j9l OCA], [http://pdbe.org/3j9l PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3j9l RCSB], [http://www.ebi.ac.uk/pdbsum/3j9l PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3j9l ProSAT]</span></td></tr>
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</table>
</table>
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{{Large structure}}
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== Function ==
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<div style="background-color:#fffaf0;">
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[https://www.uniprot.org/uniprot/Q7KLI1_DROME Q7KLI1_DROME]
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== Publication Abstract from PubMed ==
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Apoptosis is executed by a cascade of caspase activation. The autocatalytic activation of an initiator caspase, exemplified by caspase-9 in mammals or its ortholog, Dronc, in fruit flies, is facilitated by a multimeric adaptor complex known as the apoptosome. The underlying mechanism by which caspase-9 or Dronc is activated by the apoptosome remains unknown. Here we report the electron cryomicroscopic (cryo-EM) structure of the intact apoptosome from Drosophila melanogaster at 4.0 A resolution. Analysis of the Drosophila apoptosome, which comprises 16 molecules of the Dark protein (Apaf-1 ortholog), reveals molecular determinants that support the assembly of the 2.5-MDa complex. In the absence of dATP or ATP, Dronc zymogen potently induces formation of the Dark apoptosome, within which Dronc is efficiently activated. At 4.1 A resolution, the cryo-EM structure of the Dark apoptosome bound to the caspase recruitment domain (CARD) of Dronc (Dronc-CARD) reveals two stacked rings of Dronc-CARD that are sandwiched between two octameric rings of the Dark protein. The specific interactions between Dronc-CARD and both the CARD and the WD40 repeats of a nearby Dark protomer are indispensable for Dronc activation. These findings reveal important mechanistic insights into the activation of initiator caspase by the apoptosome.
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Structure of the apoptosome: mechanistic insights into activation of an initiator caspase from Drosophila.,Pang Y, Bai XC, Yan C, Hao Q, Chen Z, Wang JW, Scheres SH, Shi Y Genes Dev. 2015 Feb 1;29(3):277-87. doi: 10.1101/gad.255877.114. PMID:25644603<ref>PMID:25644603</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 3j9l" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
__TOC__
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</StructureSection>
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</SX>
[[Category: Drosophila melanogaster]]
[[Category: Drosophila melanogaster]]
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[[Category: Bai, X]]
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[[Category: Large Structures]]
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[[Category: Chen, Z]]
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[[Category: Bai X]]
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[[Category: Hao, Q]]
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[[Category: Chen Z]]
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[[Category: Pang, Y]]
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[[Category: Hao Q]]
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[[Category: Scheres, S H.W]]
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[[Category: Pang Y]]
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[[Category: Shi, Y]]
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[[Category: Scheres SHW]]
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[[Category: Wang, J]]
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[[Category: Shi Y]]
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[[Category: Yan, C]]
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[[Category: Wang J]]
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[[Category: Apoptosis]]
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[[Category: Yan C]]
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[[Category: Programmed cell death]]
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Current revision

Structure of Dark apoptosome from Drosophila melanogaster

3j9l, resolution 4.00Å

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