This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5qid

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:55, 7 February 2024) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal Structure of HAO1 in complex with Z1787627869==
==PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal Structure of HAO1 in complex with Z1787627869==
-
<StructureSection load='5qid' size='340' side='right' caption='[[5qid]], [[Resolution|resolution]] 1.45&Aring;' scene=''>
+
<StructureSection load='5qid' size='340' side='right'caption='[[5qid]], [[Resolution|resolution]] 1.45&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5qid]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5QID OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5QID FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5qid]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5QID OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5QID FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=GWY:5-chloranyl-~{N}-methyl-~{N}-[[(3~{S})-oxolan-3-yl]methyl]pyrimidin-4-amine'>GWY</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.45&#8491;</td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/(S)-2-hydroxy-acid_oxidase (S)-2-hydroxy-acid oxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.3.15 1.1.3.15] </span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=GWY:5-chloranyl-~{N}-methyl-~{N}-[[(3~{S})-oxolan-3-yl]methyl]pyrimidin-4-amine'>GWY</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5qid FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5qid OCA], [http://pdbe.org/5qid PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5qid RCSB], [http://www.ebi.ac.uk/pdbsum/5qid PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5qid ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5qid FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5qid OCA], [https://pdbe.org/5qid PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5qid RCSB], [https://www.ebi.ac.uk/pdbsum/5qid PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5qid ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/HAOX1_HUMAN HAOX1_HUMAN]] Has 2-hydroxyacid oxidase activity. Most active on the 2-carbon substrate glycolate, but is also active on 2-hydroxy fatty acids, with high activity towards 2-hydroxy palmitate and 2-hydroxy octanoate.
+
[https://www.uniprot.org/uniprot/HAOX1_HUMAN HAOX1_HUMAN] Has 2-hydroxyacid oxidase activity. Most active on the 2-carbon substrate glycolate, but is also active on 2-hydroxy fatty acids, with high activity towards 2-hydroxy palmitate and 2-hydroxy octanoate.
 +
 
 +
==See Also==
 +
*[[Glycolate oxidase 3D structures|Glycolate oxidase 3D structures]]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Arrowsmith, C H]]
+
[[Category: Homo sapiens]]
-
[[Category: Bezerra, G A]]
+
[[Category: Large Structures]]
-
[[Category: Bountra, C]]
+
[[Category: Arrowsmith CH]]
-
[[Category: Bradley, A R]]
+
[[Category: Bezerra GA]]
-
[[Category: Brandao-Neto, J]]
+
[[Category: Bountra C]]
-
[[Category: Brennan, P E]]
+
[[Category: Bradley AR]]
-
[[Category: Delft, F von]]
+
[[Category: Brandao-Neto J]]
-
[[Category: Douangamath, A]]
+
[[Category: Brennan PE]]
-
[[Category: Edwards, A]]
+
[[Category: Douangamath A]]
-
[[Category: Krojer, T]]
+
[[Category: Edwards A]]
-
[[Category: MacKinnon, S]]
+
[[Category: Krojer T]]
-
[[Category: Oppermann, U]]
+
[[Category: MacKinnon S]]
-
[[Category: Talon, R]]
+
[[Category: Oppermann U]]
-
[[Category: Yue, W W]]
+
[[Category: Talon R]]
-
[[Category: Hao1]]
+
[[Category: Yue WW]]
-
[[Category: Oxidoreductase]]
+
[[Category: Von Delft F]]
-
[[Category: Pandda]]
+
-
[[Category: Sgc - diamond i04-1 fragment screening]]
+
-
[[Category: Xchemexplorer]]
+

Current revision

PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal Structure of HAO1 in complex with Z1787627869

PDB ID 5qid

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5qid"
Personal tools