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1ktq

From Proteopedia

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(New page: 200px<br /><applet load="1ktq" size="450" color="white" frame="true" align="right" spinBox="true" caption="1ktq, resolution 2.5&Aring;" /> '''DNA POLYMERASE'''<br ...)
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[[Image:1ktq.jpg|left|200px]]<br /><applet load="1ktq" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1ktq, resolution 2.5&Aring;" />
 
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'''DNA POLYMERASE'''<br />
 
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==Overview==
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==DNA POLYMERASE==
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The crystal structure of the large fragment of the Thermus aquaticus DNA, polymerase (Klentaq1), determined at 2.5-A resolution, demonstrates a, compact two-domain architecture. The C-terminal domain is identical in, fold to the equivalent region of the Klenow fragment of Escherichia coli, DNA polymerase I (Klenow pol I). Although the N-terminal domain of, Klentaq1 differs greatly in sequence from its counterpart in Klenow pol I, it has clearly evolved from a common ancestor. The structure of Klentaq1, reveals the strategy utilized by this protein to maintain activity at high, temperatures and provides the structural basis for future improvements of, the enzyme.
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<StructureSection load='1ktq' size='340' side='right'caption='[[1ktq]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1ktq]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_aquaticus Thermus aquaticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KTQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1KTQ FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ktq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ktq OCA], [https://pdbe.org/1ktq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ktq RCSB], [https://www.ebi.ac.uk/pdbsum/1ktq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ktq ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/DPO1_THEAQ DPO1_THEAQ]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kt/1ktq_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ktq ConSurf].
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<div style="clear:both"></div>
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==About this Structure==
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==See Also==
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1KTQ is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_aquaticus Thermus aquaticus]. Active as [http://en.wikipedia.org/wiki/DNA-directed_DNA_polymerase DNA-directed DNA polymerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.7 2.7.7.7] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1KTQ OCA].
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*[[DNA polymerase 3D structures|DNA polymerase 3D structures]]
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__TOC__
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==Reference==
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</StructureSection>
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Crystal structure of the large fragment of Thermus aquaticus DNA polymerase I at 2.5-A resolution: structural basis for thermostability., Korolev S, Nayal M, Barnes WM, Di Cera E, Waksman G, Proc Natl Acad Sci U S A. 1995 Sep 26;92(20):9264-8. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=7568114 7568114]
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[[Category: Large Structures]]
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[[Category: DNA-directed DNA polymerase]]
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[[Category: Single protein]]
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[[Category: Thermus aquaticus]]
[[Category: Thermus aquaticus]]
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[[Category: Korolev, S.]]
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[[Category: Korolev S]]
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[[Category: Waksman, G.]]
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[[Category: Waksman G]]
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[[Category: dna-replication]]
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[[Category: nucleotidyltransferase]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 19:52:21 2007''
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Current revision

DNA POLYMERASE

PDB ID 1ktq

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