This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1l7d

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "1l7d" [edit=sysop:move=sysop])
Current revision (07:30, 14 February 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1l7d.png|left|200px]]
 
-
{{STRUCTURE_1l7d| PDB=1l7d | SCENE= }}
+
==Crystal Structure of R. rubrum Transhydrogenase Domain I without Bound NAD(H)==
 +
<StructureSection load='1l7d' size='340' side='right'caption='[[1l7d]], [[Resolution|resolution]] 1.81&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[1l7d]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodospirillum_rubrum Rhodospirillum rubrum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1L7D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1L7D FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.81&#8491;</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1l7d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1l7d OCA], [https://pdbe.org/1l7d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1l7d RCSB], [https://www.ebi.ac.uk/pdbsum/1l7d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1l7d ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/PNTAA_RHORT PNTAA_RHORT] The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane.[UniProtKB:P07001]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/l7/1l7d_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1l7d ConSurf].
 +
<div style="clear:both"></div>
-
===Crystal Structure of R. rubrum Transhydrogenase Domain I without Bound NAD(H)===
+
==See Also==
-
 
+
*[[NAD(P) transhydrogenase 3D structures|NAD(P) transhydrogenase 3D structures]]
-
{{ABSTRACT_PUBMED_12379117}}
+
__TOC__
-
 
+
</StructureSection>
-
==About this Structure==
+
[[Category: Large Structures]]
-
[[1l7d]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodospirillum_rubrum Rhodospirillum rubrum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1L7D OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:012379117</ref><references group="xtra"/>
+
[[Category: Rhodospirillum rubrum]]
[[Category: Rhodospirillum rubrum]]
-
[[Category: Hatefi, Y.]]
+
[[Category: Hatefi Y]]
-
[[Category: Prasad, G S.]]
+
[[Category: Prasad GS]]
-
[[Category: Sridhar, V.]]
+
[[Category: Sridhar V]]
-
[[Category: Stout, C D.]]
+
[[Category: Stout CD]]
-
[[Category: Wahlberg, M.]]
+
[[Category: Wahlberg M]]
-
[[Category: Yamaguchi, M.]]
+
[[Category: Yamaguchi M]]
-
[[Category: Oxidoreductase]]
+
-
[[Category: Transhydrogenase domain i]]
+

Current revision

Crystal Structure of R. rubrum Transhydrogenase Domain I without Bound NAD(H)

PDB ID 1l7d

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools