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1lkp

From Proteopedia

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{{Seed}}
 
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[[Image:1lkp.png|left|200px]]
 
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<!--
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==Crystal structure of Desulfovibrio vulgaris rubrerythrin all-iron(II) form, azide adduct==
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The line below this paragraph, containing "STRUCTURE_1lkp", creates the "Structure Box" on the page.
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<StructureSection load='1lkp' size='340' side='right'caption='[[1lkp]], [[Resolution|resolution]] 1.64&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1lkp]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Desulfovibrio_vulgaris Desulfovibrio vulgaris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LKP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1LKP FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.64&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AZI:AZIDE+ION'>AZI</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene></td></tr>
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{{STRUCTURE_1lkp| PDB=1lkp | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1lkp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1lkp OCA], [https://pdbe.org/1lkp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1lkp RCSB], [https://www.ebi.ac.uk/pdbsum/1lkp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1lkp ProSAT]</span></td></tr>
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</table>
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===Crystal structure of Desulfovibrio vulgaris rubrerythrin all-iron(II) form, azide adduct===
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== Function ==
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[https://www.uniprot.org/uniprot/RUBY_DESVH RUBY_DESVH] May provide oxidative stress protection via catalytic reduction of intracellular hydrogen peroxide (By similarity).
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== Evolutionary Conservation ==
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<!--
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[[Image:Consurf_key_small.gif|200px|right]]
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The line below this paragraph, {{ABSTRACT_PUBMED_12175244}}, adds the Publication Abstract to the page
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Check<jmol>
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(as it appears on PubMed at http://www.pubmed.gov), where 12175244 is the PubMed ID number.
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/lk/1lkp_consurf.spt"</scriptWhenChecked>
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{{ABSTRACT_PUBMED_12175244}}
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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==About this Structure==
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</jmolCheckbox>
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1LKP is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_vulgaris Desulfovibrio vulgaris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LKP OCA].
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1lkp ConSurf].
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<div style="clear:both"></div>
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==Reference==
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__TOC__
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<ref group="xtra">PMID:12175244</ref><references group="xtra"/>
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</StructureSection>
[[Category: Desulfovibrio vulgaris]]
[[Category: Desulfovibrio vulgaris]]
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[[Category: Jin, S.]]
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[[Category: Large Structures]]
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[[Category: Jr., D M.Kurtz.]]
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[[Category: Jin S]]
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[[Category: Liu, Z J.]]
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[[Category: Kurtz Jr DM]]
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[[Category: Rose, J.]]
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[[Category: Liu ZJ]]
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[[Category: Wang, B C.]]
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[[Category: Rose J]]
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[[Category: Azide adduct]]
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[[Category: Wang BC]]
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[[Category: Diiron]]
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[[Category: Four-helix bundle]]
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[[Category: Reduced form]]
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[[Category: Rubredoxin-like]]
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[[Category: Rubrerythrin]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 12:52:17 2009''
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Current revision

Crystal structure of Desulfovibrio vulgaris rubrerythrin all-iron(II) form, azide adduct

PDB ID 1lkp

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