This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1lyx

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:37, 14 February 2024) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1lyx.png|left|200px]]
 
-
{{STRUCTURE_1lyx| PDB=1lyx | SCENE= }}
+
==Plasmodium Falciparum Triosephosphate Isomerase (PfTIM)-Phosphoglycolate complex==
-
 
+
<StructureSection load='1lyx' size='340' side='right'caption='[[1lyx]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
-
===Plasmodium Falciparum Triosephosphate Isomerase (PfTIM)-Phosphoglycolate complex===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[1lyx]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Plasmodium_falciparum Plasmodium falciparum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LYX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1LYX FirstGlance]. <br>
-
{{ABSTRACT_PUBMED_12403619}}
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-
 
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PGA:2-PHOSPHOGLYCOLIC+ACID'>PGA</scene></td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1lyx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1lyx OCA], [https://pdbe.org/1lyx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1lyx RCSB], [https://www.ebi.ac.uk/pdbsum/1lyx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1lyx ProSAT]</span></td></tr>
-
[[1lyx]] is a 1 chain structure of [[Triose Phosphate Isomerase]] with sequence from [http://en.wikipedia.org/wiki/Plasmodium_falciparum Plasmodium falciparum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LYX OCA].
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/TPIS_PLAFA TPIS_PLAFA]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ly/1lyx_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1lyx ConSurf].
 +
<div style="clear:both"></div>
==See Also==
==See Also==
-
*[[Triose Phosphate Isomerase|Triose Phosphate Isomerase]]
+
*[[Triose phosphate isomerase 3D structures|Triose phosphate isomerase 3D structures]]
-
 
+
__TOC__
-
==Reference==
+
</StructureSection>
-
<ref group="xtra">PMID:012403619</ref><references group="xtra"/>
+
[[Category: Large Structures]]
[[Category: Plasmodium falciparum]]
[[Category: Plasmodium falciparum]]
-
[[Category: Triose-phosphate isomerase]]
+
[[Category: Balaram H]]
-
[[Category: Balaram, H.]]
+
[[Category: Balaram P]]
-
[[Category: Balaram, P.]]
+
[[Category: Murthy MR]]
-
[[Category: Murthy, M R.]]
+
[[Category: Parthasarathy S]]
-
[[Category: Parthasarathy, S.]]
+
-
[[Category: Beta-alpha barrel]]
+
-
[[Category: Isomerase]]
+
-
[[Category: Tim barrel]]
+

Current revision

Plasmodium Falciparum Triosephosphate Isomerase (PfTIM)-Phosphoglycolate complex

PDB ID 1lyx

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools