This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
1lyx
From Proteopedia
(Difference between revisions)
| (6 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | {{STRUCTURE_1lyx| PDB=1lyx | SCENE= }} | ||
| - | ===Plasmodium Falciparum Triosephosphate Isomerase (PfTIM)-Phosphoglycolate complex=== | ||
| - | {{ABSTRACT_PUBMED_12403619}} | ||
| - | == | + | ==Plasmodium Falciparum Triosephosphate Isomerase (PfTIM)-Phosphoglycolate complex== |
| - | [[1lyx]] is a 1 chain structure with sequence from [ | + | <StructureSection load='1lyx' size='340' side='right'caption='[[1lyx]], [[Resolution|resolution]] 1.90Å' scene=''> |
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[1lyx]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Plasmodium_falciparum Plasmodium falciparum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LYX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1LYX FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9Å</td></tr> | ||
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PGA:2-PHOSPHOGLYCOLIC+ACID'>PGA</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1lyx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1lyx OCA], [https://pdbe.org/1lyx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1lyx RCSB], [https://www.ebi.ac.uk/pdbsum/1lyx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1lyx ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/TPIS_PLAFA TPIS_PLAFA] | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ly/1lyx_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1lyx ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
==See Also== | ==See Also== | ||
| - | *[[Triose | + | *[[Triose phosphate isomerase 3D structures|Triose phosphate isomerase 3D structures]] |
| - | + | __TOC__ | |
| - | + | </StructureSection> | |
| - | < | + | [[Category: Large Structures]] |
[[Category: Plasmodium falciparum]] | [[Category: Plasmodium falciparum]] | ||
| - | + | [[Category: Balaram H]] | |
| - | [[Category: Balaram | + | [[Category: Balaram P]] |
| - | [[Category: Balaram | + | [[Category: Murthy MR]] |
| - | [[Category: Murthy | + | [[Category: Parthasarathy S]] |
| - | [[Category: Parthasarathy | + | |
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
Plasmodium Falciparum Triosephosphate Isomerase (PfTIM)-Phosphoglycolate complex
| |||||||||||

