This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1m3x

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "1m3x" [edit=sysop:move=sysop])
Current revision (07:39, 14 February 2024) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1m3x.png|left|200px]]
 
-
{{STRUCTURE_1m3x| PDB=1m3x | SCENE= }}
+
==Photosynthetic Reaction Center From Rhodobacter Sphaeroides==
-
 
+
<StructureSection load='1m3x' size='340' side='right'caption='[[1m3x]], [[Resolution|resolution]] 2.55&Aring;' scene=''>
-
===Photosynthetic Reaction Center From Rhodobacter Sphaeroides===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[1m3x]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Cereibacter_sphaeroides Cereibacter sphaeroides]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1M3X OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1M3X FirstGlance]. <br>
-
{{ABSTRACT_PUBMED_12167672}}
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.55&#8491;</td></tr>
-
 
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BCL:BACTERIOCHLOROPHYLL+A'>BCL</scene>, <scene name='pdbligand=BPH:BACTERIOPHEOPHYTIN+A'>BPH</scene>, <scene name='pdbligand=CDL:CARDIOLIPIN'>CDL</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=GGD:NONADEC-10-ENOIC+ACID+2-[3,4-DIHYDROXY-6-HYDROXYMETHYL-5-(3,4,5-TRIHYDROXY-6-HYDROXYMETHYL-TETRAHYDRO-PYRAN-2-YLOXY)-TETRAHYDRO-PYRAN-2-YLOXY]-1-OCTADEC-9-ENOYLOXYMETHYL-ETHYL+ESTER'>GGD</scene>, <scene name='pdbligand=PC1:1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE'>PC1</scene>, <scene name='pdbligand=SPO:SPHEROIDENE'>SPO</scene>, <scene name='pdbligand=U10:UBIQUINONE-10'>U10</scene></td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1m3x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1m3x OCA], [https://pdbe.org/1m3x PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1m3x RCSB], [https://www.ebi.ac.uk/pdbsum/1m3x PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1m3x ProSAT]</span></td></tr>
-
[[1m3x]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodobacter_sphaeroides Rhodobacter sphaeroides]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1M3X OCA].
+
</table>
-
 
+
== Function ==
-
==Reference==
+
[https://www.uniprot.org/uniprot/RCEL_CERSP RCEL_CERSP] The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.
-
<ref group="xtra">PMID:012167672</ref><references group="xtra"/>
+
== Evolutionary Conservation ==
-
[[Category: Rhodobacter sphaeroides]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Allen, J P.]]
+
Check<jmol>
-
[[Category: Brune, D.]]
+
<jmolCheckbox>
-
[[Category: Camara-Artigas, A.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/m3/1m3x_consurf.spt"</scriptWhenChecked>
-
[[Category: Alpha helix]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Membrane protein]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Photosynthesis]]
+
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1m3x ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Cereibacter sphaeroides]]
 +
[[Category: Large Structures]]
 +
[[Category: Allen JP]]
 +
[[Category: Brune D]]
 +
[[Category: Camara-Artigas A]]

Current revision

Photosynthetic Reaction Center From Rhodobacter Sphaeroides

PDB ID 1m3x

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1m3x"
Personal tools