This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1m5h

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:39, 14 February 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1m5h.png|left|200px]]
 
-
<!--
+
==Formylmethanofuran:tetrahydromethanopterin formyltransferase from Archaeoglobus fulgidus==
-
The line below this paragraph, containing "STRUCTURE_1m5h", creates the "Structure Box" on the page.
+
<StructureSection load='1m5h' size='340' side='right'caption='[[1m5h]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1m5h]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Archaeoglobus_fulgidus Archaeoglobus fulgidus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1M5H OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1M5H FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene></td></tr>
-
{{STRUCTURE_1m5h| PDB=1m5h | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1m5h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1m5h OCA], [https://pdbe.org/1m5h PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1m5h RCSB], [https://www.ebi.ac.uk/pdbsum/1m5h PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1m5h ProSAT]</span></td></tr>
-
 
+
</table>
-
===Formylmethanofuran:tetrahydromethanopterin formyltransferase from Archaeoglobus fulgidus===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/FTR_ARCFU FTR_ARCFU] Catalyzes the transfer of a formyl group from 5-formyl tetrahydromethanopterin (5-formyl-H(4)MPT) to methanofuran (MFR) so as to produce formylmethanofuran (formyl-MFR) and tetrahydromethanopterin (H(4)MPT).<ref>PMID:8481089</ref>
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_12192072}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 12192072 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/m5/1m5h_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_12192072}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
1M5H is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Archaeoglobus_fulgidus Archaeoglobus fulgidus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1M5H OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1m5h ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
== References ==
-
Crystal structures and enzymatic properties of three formyltransferases from archaea: environmental adaptation and evolutionary relationship., Mamat B, Roth A, Grimm C, Ermler U, Tziatzios C, Schubert D, Thauer RK, Shima S, Protein Sci. 2002 Sep;11(9):2168-78. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12192072 12192072]
+
<references/>
 +
__TOC__
 +
</StructureSection>
[[Category: Archaeoglobus fulgidus]]
[[Category: Archaeoglobus fulgidus]]
-
[[Category: Formylmethanofuran--tetrahydromethanopterin N-formyltransferase]]
+
[[Category: Large Structures]]
-
[[Category: Single protein]]
+
[[Category: Ermler U]]
-
[[Category: Ermler, U.]]
+
[[Category: Grimm C]]
-
[[Category: Grimm, C.]]
+
[[Category: Mamat B]]
-
[[Category: Mamat, B.]]
+
[[Category: Roth A]]
-
[[Category: Roth, A.]]
+
[[Category: Schubert D]]
-
[[Category: Schubert, D.]]
+
[[Category: Shima S]]
-
[[Category: Shima, S.]]
+
[[Category: Thauer RK]]
-
[[Category: Thauer, R K.]]
+
[[Category: Tziatzios C]]
-
[[Category: Tziatzios, C.]]
+
-
[[Category: Alpha/beta sandwich]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 2 23:15:21 2008''
+

Current revision

Formylmethanofuran:tetrahydromethanopterin formyltransferase from Archaeoglobus fulgidus

PDB ID 1m5h

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1m5h"
Personal tools