1m68

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:40, 14 February 2024) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1m68.gif|left|200px]]
 
-
{{Structure
+
==YCDX PROTEIN, TRINUCLEAR ZINC SITE==
-
|PDB= 1m68 |SIZE=350|CAPTION= <scene name='initialview01'>1m68</scene>, resolution 2.30&Aring;
+
<StructureSection load='1m68' size='340' side='right'caption='[[1m68]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene> and <scene name='pdbligand=SO4:SULFATE ION'>SO4</scene>
+
<table><tr><td colspan='2'>[[1m68]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1M68 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1M68 FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
-
|GENE=
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
}}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1m68 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1m68 OCA], [https://pdbe.org/1m68 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1m68 RCSB], [https://www.ebi.ac.uk/pdbsum/1m68 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1m68 ProSAT]</span></td></tr>
-
 
+
</table>
-
'''YCDX PROTEIN, TRINUCLEAR ZINC SITE'''
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/YCDX_ECOLI YCDX_ECOLI] Hydrolyzes p-nitrophenyl phosphate (pNPP) in vitro. Involved in the swarming motility process.<ref>PMID:21965574</ref>
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
1M68 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1M68 OCA].
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
==Reference==
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/m6/1m68_consurf.spt"</scriptWhenChecked>
-
Crystal structure of the Escherichia coli YcdX protein reveals a trinuclear zinc active site., Teplyakov A, Obmolova G, Khil PP, Howard AJ, Camerini-Otero RD, Gilliland GL, Proteins. 2003 May 1;51(2):315-8. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12661000 12661000]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1m68 ConSurf].
 +
<div style="clear:both"></div>
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
-
[[Category: Camerini-Otero, R D.]]
+
[[Category: Camerini-Otero RD]]
-
[[Category: Gilliland, G L.]]
+
[[Category: Gilliland GL]]
-
[[Category: Khil, P P.]]
+
[[Category: Khil PP]]
-
[[Category: Obmolova, G.]]
+
[[Category: Obmolova G]]
-
[[Category: Teplyakov, A.]]
+
[[Category: Teplyakov A]]
-
[[Category: SO4]]
+
-
[[Category: ZN]]
+
-
[[Category: beta-alpha-barrel]]
+
-
[[Category: structural genomic]]
+
-
[[Category: trinuclear zinc]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 12:39:26 2008''
+

Current revision

YCDX PROTEIN, TRINUCLEAR ZINC SITE

PDB ID 1m68

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools