This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1ma7

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:42, 14 February 2024) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1ma7.png|left|200px]]
 
-
<!--
+
==Crystal structure of Cre site-specific recombinase complexed with a mutant DNA substrate, LoxP-A8/T27==
-
The line below this paragraph, containing "STRUCTURE_1ma7", creates the "Structure Box" on the page.
+
<StructureSection load='1ma7' size='340' side='right'caption='[[1ma7]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1ma7]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_P1 Escherichia virus P1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1MA7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1MA7 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ma7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ma7 OCA], [https://pdbe.org/1ma7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ma7 RCSB], [https://www.ebi.ac.uk/pdbsum/1ma7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ma7 ProSAT]</span></td></tr>
-
{{STRUCTURE_1ma7| PDB=1ma7 | SCENE= }}
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/RECR_BPP1 RECR_BPP1] Catalyzes site-specific recombination between two 34-base-pair LOXP sites. Its role is to maintain the phage genome as a monomeric unit-copy plasmid in the lysogenic state.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ma/1ma7_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ma7 ConSurf].
 +
<div style="clear:both"></div>
-
===Crystal structure of Cre site-specific recombinase complexed with a mutant DNA substrate, LoxP-A8/T27===
+
==See Also==
-
 
+
*[[Resolvase 3D structures|Resolvase 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_12779336}}, adds the Publication Abstract to the page
+
[[Category: Escherichia virus P1]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 12779336 is the PubMed ID number.
+
[[Category: Large Structures]]
-
-->
+
[[Category: Baldwin EP]]
-
{{ABSTRACT_PUBMED_12779336}}
+
[[Category: Chu VC]]
-
 
+
[[Category: Martin SS]]
-
==About this Structure==
+
-
1MA7 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_p1 Enterobacteria phage p1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1MA7 OCA].
+
-
 
+
-
==Reference==
+
-
Modulation of the active complex assembly and turnover rate by protein-DNA interactions in Cre-LoxP recombination., Martin SS, Chu VC, Baldwin E, Biochemistry. 2003 Jun 10;42(22):6814-26. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12779336 12779336]
+
-
[[Category: Enterobacteria phage p1]]
+
-
[[Category: Single protein]]
+
-
[[Category: Baldwin, E P.]]
+
-
[[Category: Chu, V C.]]
+
-
[[Category: Martin, S S.]]
+
-
[[Category: Cre-lox site-specific recombination]]
+
-
[[Category: Protein-dna complex]]
+
-
[[Category: Specificity of protein-dna interaction]]
+
-
[[Category: Tyrosine recombinase]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 2 23:32:37 2008''
+

Current revision

Crystal structure of Cre site-specific recombinase complexed with a mutant DNA substrate, LoxP-A8/T27

PDB ID 1ma7

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1ma7"
Personal tools