This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1moj

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:46, 14 February 2024) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1moj.png|left|200px]]
 
-
<!--
+
==Crystal structure of an archaeal dps-homologue from Halobacterium salinarum==
-
The line below this paragraph, containing "STRUCTURE_1moj", creates the "Structure Box" on the page.
+
<StructureSection load='1moj' size='340' side='right'caption='[[1moj]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1moj]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Halobacterium_salinarum Halobacterium salinarum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1MOJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1MOJ FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-
{{STRUCTURE_1moj| PDB=1moj | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1moj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1moj OCA], [https://pdbe.org/1moj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1moj RCSB], [https://www.ebi.ac.uk/pdbsum/1moj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1moj ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/DPS_HALSA DPS_HALSA] Protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral. One hydrogen peroxide oxidizes two Fe(2+) ions, which prevents hydroxyl radical production by the Fenton reaction (By similarity).
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/mo/1moj_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1moj ConSurf].
 +
<div style="clear:both"></div>
-
===Crystal structure of an archaeal dps-homologue from Halobacterium salinarum===
+
==See Also==
-
 
+
*[[Ferritin 3D structures|Ferritin 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_15365182}}, adds the Publication Abstract to the page
+
-
(as it appears on PubMed at http://www.pubmed.gov), where 15365182 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_15365182}}
+
-
 
+
-
==About this Structure==
+
-
1MOJ is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Halobacterium_salinarum Halobacterium salinarum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1MOJ OCA].
+
-
 
+
-
==Reference==
+
-
Iron-oxo clusters biomineralizing on protein surfaces: structural analysis of Halobacterium salinarum DpsA in its low- and high-iron states., Zeth K, Offermann S, Essen LO, Oesterhelt D, Proc Natl Acad Sci U S A. 2004 Sep 21;101(38):13780-5. Epub 2004 Sep 13. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15365182 15365182]
+
[[Category: Halobacterium salinarum]]
[[Category: Halobacterium salinarum]]
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
-
[[Category: Essen, L O.]]
+
[[Category: Essen LO]]
-
[[Category: Oesterhelt, D.]]
+
[[Category: Oesterhelt D]]
-
[[Category: Offermann, S.]]
+
[[Category: Offermann S]]
-
[[Category: Zeth, K.]]
+
[[Category: Zeth K]]
-
[[Category: Dp]]
+
-
[[Category: Ferritin]]
+
-
[[Category: Four-helix bundle]]
+
-
[[Category: Halophilic]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Jul 3 00:33:58 2008''
+

Current revision

Crystal structure of an archaeal dps-homologue from Halobacterium salinarum

PDB ID 1moj

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1moj"
Personal tools