This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1mrz

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:47, 14 February 2024) (edit) (undo)
 
(15 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1mrz.gif|left|200px]]
 
-
{{Structure
+
==Crystal structure of a flavin binding protein from Thermotoga Maritima, TM379==
-
|PDB= 1mrz |SIZE=350|CAPTION= <scene name='initialview01'>1mrz</scene>, resolution 1.900&Aring;
+
<StructureSection load='1mrz' size='340' side='right'caption='[[1mrz]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=CIT:CITRIC ACID'>CIT</scene>
+
<table><tr><td colspan='2'>[[1mrz]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1MRZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1MRZ FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-
|GENE= TM379 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2336 Thermotoga maritima])
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene></td></tr>
-
}}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1mrz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1mrz OCA], [https://pdbe.org/1mrz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1mrz RCSB], [https://www.ebi.ac.uk/pdbsum/1mrz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1mrz ProSAT], [https://www.topsan.org/Proteins/BSGC/1mrz TOPSAN]</span></td></tr>
-
 
+
</table>
-
'''Crystal structure of a flavin binding protein from Thermotoga Maritima, TM379'''
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q9WZW1_THEMA Q9WZW1_THEMA]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
1MRZ is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1MRZ OCA].
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
==Reference==
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/mr/1mrz_consurf.spt"</scriptWhenChecked>
-
Crystal structure of a flavin-binding protein from Thermotoga maritima., Wang W, Kim R, Jancarik J, Yokota H, Kim SH, Proteins. 2003 Sep 1;52(4):633-5. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12910462 12910462]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Single protein]]
+
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1mrz ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Thermotoga maritima]]
[[Category: Thermotoga maritima]]
-
[[Category: BSGC, Berkeley Structural Genomics Center.]]
+
[[Category: Jancarik J]]
-
[[Category: Jancarik, J.]]
+
[[Category: Kim R]]
-
[[Category: Kim, R.]]
+
[[Category: Kim S-H]]
-
[[Category: Kim, S H.]]
+
[[Category: Wang W]]
-
[[Category: Wang, W.]]
+
[[Category: Yokota H]]
-
[[Category: Yokota, H.]]
+
-
[[Category: CIT]]
+
-
[[Category: 6-stranded beta barrel]]
+
-
[[Category: berkeley structural genomics center]]
+
-
[[Category: bsgc structure funded by nih]]
+
-
[[Category: flavin binding domain]]
+
-
[[Category: nucleotide binding domain]]
+
-
[[Category: protein structure initiative]]
+
-
[[Category: psi]]
+
-
[[Category: rossmann fold]]
+
-
[[Category: structural genomic]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 12:47:28 2008''
+

Current revision

Crystal structure of a flavin binding protein from Thermotoga Maritima, TM379

PDB ID 1mrz

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools