This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1ndk

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:55, 14 February 2024) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1ndk.png|left|200px]]
 
-
<!--
+
==X-RAY STRUCTURE OF NUCLEOSIDE DIPHOSPHATE KINASE==
-
The line below this paragraph, containing "STRUCTURE_1ndk", creates the "Structure Box" on the page.
+
<StructureSection load='1ndk' size='340' side='right'caption='[[1ndk]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1ndk]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Dictyostelium_discoideum Dictyostelium discoideum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NDK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1NDK FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ndk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ndk OCA], [https://pdbe.org/1ndk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ndk RCSB], [https://www.ebi.ac.uk/pdbsum/1ndk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ndk ProSAT]</span></td></tr>
-
{{STRUCTURE_1ndk| PDB=1ndk | SCENE= }}
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/NDKC_DICDI NDKC_DICDI]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nd/1ndk_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ndk ConSurf].
 +
<div style="clear:both"></div>
-
===X-RAY STRUCTURE OF NUCLEOSIDE DIPHOSPHATE KINASE===
+
==See Also==
-
 
+
*[[Nucleoside diphosphate kinase 3D structures|Nucleoside diphosphate kinase 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_1324167}}, adds the Publication Abstract to the page
+
-
(as it appears on PubMed at http://www.pubmed.gov), where 1324167 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_1324167}}
+
-
 
+
-
==About this Structure==
+
-
1NDK is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Dictyostelium_discoideum Dictyostelium discoideum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NDK OCA].
+
-
 
+
-
==Reference==
+
-
X-ray structure of nucleoside diphosphate kinase., Dumas C, Lascu I, Morera S, Glaser P, Fourme R, Wallet V, Lacombe ML, Veron M, Janin J, EMBO J. 1992 Sep;11(9):3203-8. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/1324167 1324167]
+
[[Category: Dictyostelium discoideum]]
[[Category: Dictyostelium discoideum]]
-
[[Category: Nucleoside-diphosphate kinase]]
+
[[Category: Large Structures]]
-
[[Category: Single protein]]
+
[[Category: Dumas C]]
-
[[Category: Dumas, C.]]
+
[[Category: Janin J]]
-
[[Category: Janin, J.]]
+
[[Category: Lascu I]]
-
[[Category: Lascu, I.]]
+
[[Category: Morera S]]
-
[[Category: Morera, S.]]
+
[[Category: Veron M]]
-
[[Category: Veron, M.]]
+
-
[[Category: Transferase]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 16:12:00 2008''
+

Current revision

X-RAY STRUCTURE OF NUCLEOSIDE DIPHOSPHATE KINASE

PDB ID 1ndk

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools