This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1nlf

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:57, 14 February 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1nlf.png|left|200px]]
 
-
<!--
+
==Crystal Structure of DNA Helicase RepA in complex with sulfate at 1.95 A resolution==
-
The line below this paragraph, containing "STRUCTURE_1nlf", creates the "Structure Box" on the page.
+
<StructureSection load='1nlf' size='340' side='right'caption='[[1nlf]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1nlf]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NLF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1NLF FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.95&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
{{STRUCTURE_1nlf| PDB=1nlf | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1nlf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1nlf OCA], [https://pdbe.org/1nlf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1nlf RCSB], [https://www.ebi.ac.uk/pdbsum/1nlf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1nlf ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/REPJ_ECOLX REPJ_ECOLX] This protein is involved in regulating the plasmid copy-number. Increasing the level of this protein results in a higher plasmid copy-number.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nl/1nlf_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1nlf ConSurf].
 +
<div style="clear:both"></div>
-
===Crystal Structure of DNA Helicase RepA in complex with sulfate at 1.95 A resolution===
+
==See Also==
-
 
+
*[[Helicase 3D structures|Helicase 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_12777796}}, adds the Publication Abstract to the page
+
-
(as it appears on PubMed at http://www.pubmed.gov), where 12777796 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_12777796}}
+
-
 
+
-
==About this Structure==
+
-
1NLF is a 3 chains structure of sequences from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NLF OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:12777796</ref><references group="xtra"/>
+
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
-
[[Category: Bottcher, C.]]
+
[[Category: Large Structures]]
-
[[Category: Ludwig, K.]]
+
[[Category: Bottcher C]]
-
[[Category: Saenger, W.]]
+
[[Category: Ludwig K]]
-
[[Category: Schroeder, W.]]
+
[[Category: Saenger W]]
-
[[Category: Strater, N.]]
+
[[Category: Schroeder W]]
-
[[Category: Xu, H.]]
+
[[Category: Strater N]]
-
[[Category: Replicative dna helicase structural change]]
+
[[Category: Xu H]]
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 13:39:41 2009''
+

Current revision

Crystal Structure of DNA Helicase RepA in complex with sulfate at 1.95 A resolution

PDB ID 1nlf

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools