This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1ny5

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:00, 14 February 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1ny5.png|left|200px]]
 
-
<!--
+
==Crystal structure of sigm54 activator (AAA+ ATPase) in the inactive state==
-
The line below this paragraph, containing "STRUCTURE_1ny5", creates the "Structure Box" on the page.
+
<StructureSection load='1ny5' size='340' side='right'caption='[[1ny5]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1ny5]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NY5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1NY5 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-
{{STRUCTURE_1ny5| PDB=1ny5 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ny5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ny5 OCA], [https://pdbe.org/1ny5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ny5 RCSB], [https://www.ebi.ac.uk/pdbsum/1ny5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ny5 ProSAT]</span></td></tr>
-
 
+
</table>
-
===Crystal structure of sigm54 activator (AAA+ ATPase) in the inactive state===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/O67198_AQUAE O67198_AQUAE]
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_14561776}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 14561776 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ny/1ny5_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_14561776}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
1NY5 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NY5 OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ny5 ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
__TOC__
-
Regulation of the transcriptional activator NtrC1: structural studies of the regulatory and AAA+ ATPase domains., Lee SY, De La Torre A, Yan D, Kustu S, Nixon BT, Wemmer DE, Genes Dev. 2003 Oct 15;17(20):2552-63. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/14561776 14561776]
+
</StructureSection>
[[Category: Aquifex aeolicus]]
[[Category: Aquifex aeolicus]]
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
-
[[Category: Kustu, S.]]
+
[[Category: Kustu S]]
-
[[Category: Lee, S Y.]]
+
[[Category: Lee SY]]
-
[[Category: Nixon, B T.]]
+
[[Category: Nixon BT]]
-
[[Category: Torre, A de la.]]
+
[[Category: Wemmer DE]]
-
[[Category: Wemmer, D E.]]
+
[[Category: De la Torre A]]
-
[[Category: Aaa+ atpase]]
+
-
[[Category: Bacterial transcription]]
+
-
[[Category: Dimer]]
+
-
[[Category: Sigma54 activator]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Jul 27 16:46:51 2008''
+

Current revision

Crystal structure of sigm54 activator (AAA+ ATPase) in the inactive state

PDB ID 1ny5

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1ny5"
Personal tools