This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1pix

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:08, 14 February 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1pix.png|left|200px]]
 
-
{{STRUCTURE_1pix| PDB=1pix | SCENE= }}
+
==Crystal structure of the carboxyltransferase subunit of the bacterial ion pump glutaconyl-coenzyme A decarboxylase==
-
 
+
<StructureSection load='1pix' size='340' side='right'caption='[[1pix]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
-
===Crystal structure of the carboxyltransferase subunit of the bacterial ion pump glutaconyl-coenzyme A decarboxylase===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[1pix]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Acidaminococcus_fermentans Acidaminococcus fermentans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PIX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1PIX FirstGlance]. <br>
-
{{ABSTRACT_PUBMED_12853465}}
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
-
 
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1pix FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pix OCA], [https://pdbe.org/1pix PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1pix RCSB], [https://www.ebi.ac.uk/pdbsum/1pix PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1pix ProSAT]</span></td></tr>
-
[[1pix]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Acidaminococcus_fermentans Acidaminococcus fermentans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PIX OCA].
+
</table>
-
 
+
== Function ==
-
==Reference==
+
[https://www.uniprot.org/uniprot/GCDA_ACIFV GCDA_ACIFV] Decarboxylase subunit of the primary sodium pump glutaconyl-CoA decarboxylase (GCD).
-
<ref group="xtra">PMID:012853465</ref><references group="xtra"/>
+
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pi/1pix_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1pix ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
[[Category: Acidaminococcus fermentans]]
[[Category: Acidaminococcus fermentans]]
-
[[Category: Glutaconyl-CoA decarboxylase]]
+
[[Category: Large Structures]]
-
[[Category: Buckel, W.]]
+
[[Category: Buckel W]]
-
[[Category: Huber, R.]]
+
[[Category: Huber R]]
-
[[Category: Jacob, U.]]
+
[[Category: Jacob U]]
-
[[Category: Schall, I.]]
+
[[Category: Schall I]]
-
[[Category: Wendt, K S.]]
+
[[Category: Wendt KS]]
-
[[Category: Biotin-dependent ion pump]]
+
-
[[Category: Carboxyltransferase]]
+
-
[[Category: Decarboxylase]]
+
-
[[Category: Lyase]]
+

Current revision

Crystal structure of the carboxyltransferase subunit of the bacterial ion pump glutaconyl-coenzyme A decarboxylase

PDB ID 1pix

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools