1pp8

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{{Seed}}
 
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[[Image:1pp8.png|left|200px]]
 
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==crystal structure of the T. vaginalis IBP39 Initiator binding domain (IBD) bound to the alpha-SCS Inr element==
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The line below this paragraph, containing "STRUCTURE_1pp8", creates the "Structure Box" on the page.
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<StructureSection load='1pp8' size='340' side='right'caption='[[1pp8]], [[Resolution|resolution]] 3.05&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1pp8]] is a 14 chain structure with sequence from [https://en.wikipedia.org/wiki/Trichomonas_vaginalis Trichomonas vaginalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PP8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1PP8 FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.05&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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{{STRUCTURE_1pp8| PDB=1pp8 | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1pp8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pp8 OCA], [https://pdbe.org/1pp8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1pp8 RCSB], [https://www.ebi.ac.uk/pdbsum/1pp8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1pp8 ProSAT]</span></td></tr>
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</table>
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===crystal structure of the T. vaginalis IBP39 Initiator binding domain (IBD) bound to the alpha-SCS Inr element===
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== Function ==
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[https://www.uniprot.org/uniprot/Q95VR4_TRIVA Q95VR4_TRIVA]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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(as it appears on PubMed at http://www.pubmed.gov), where 14622596 is the PubMed ID number.
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pp/1pp8_consurf.spt"</scriptWhenChecked>
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{{ABSTRACT_PUBMED_14622596}}
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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==About this Structure==
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</jmolCheckbox>
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1PP8 is a 14 chains structure of sequences from [http://en.wikipedia.org/wiki/Trichomonas_vaginalis Trichomonas vaginalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PP8 OCA].
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1pp8 ConSurf].
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<div style="clear:both"></div>
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==Reference==
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__TOC__
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<ref group="xtra">PMID:14622596</ref><references group="xtra"/>
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</StructureSection>
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[[Category: Large Structures]]
[[Category: Trichomonas vaginalis]]
[[Category: Trichomonas vaginalis]]
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[[Category: Johnson, P J.]]
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[[Category: Johnson PJ]]
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[[Category: Lau, A O.T.]]
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[[Category: Lau AOT]]
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[[Category: Schumacher, M A.]]
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[[Category: Schumacher MA]]
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[[Category: Core promoter]]
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[[Category: Ibp39]]
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[[Category: Initiator binding protein]]
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[[Category: Inr]]
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[[Category: T. vaginali]]
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[[Category: Transcription]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 18:27:04 2009''
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Current revision

crystal structure of the T. vaginalis IBP39 Initiator binding domain (IBD) bound to the alpha-SCS Inr element

PDB ID 1pp8

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OCA

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