This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1ps0

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:10, 14 February 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1ps0.png|left|200px]]
 
-
<!--
+
==Crystal Structure of the NADP(H)-Dependent Cinnamyl Alcohol Dehydrogenase from Saccharomyces cerevisiae==
-
The line below this paragraph, containing "STRUCTURE_1ps0", creates the "Structure Box" on the page.
+
<StructureSection load='1ps0' size='340' side='right'caption='[[1ps0]], [[Resolution|resolution]] 3.01&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1ps0]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PS0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1PS0 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.01&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAP:NADP+NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
{{STRUCTURE_1ps0| PDB=1ps0 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ps0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ps0 OCA], [https://pdbe.org/1ps0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ps0 RCSB], [https://www.ebi.ac.uk/pdbsum/1ps0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ps0 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/ADH6_YEAST ADH6_YEAST] NADP-dependent alcohol dehydrogenase with a broad substrate specificity.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ps/1ps0_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ps0 ConSurf].
 +
<div style="clear:both"></div>
-
===Crystal Structure of the NADP(H)-Dependent Cinnamyl Alcohol Dehydrogenase from Saccharomyces cerevisiae===
+
==See Also==
-
 
+
*[[Alcohol dehydrogenase 3D structures|Alcohol dehydrogenase 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_15289102}}, adds the Publication Abstract to the page
+
[[Category: Large Structures]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 15289102 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_15289102}}
+
-
 
+
-
==About this Structure==
+
-
1PS0 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PS0 OCA].
+
-
 
+
-
==Reference==
+
-
Apo and Holo structures of an NADPH-dependent cinnamyl alcohol dehydrogenase from Saccharomyces cerevisiae., Valencia E, Larroy C, Ochoa WF, Pares X, Fita I, Biosca JA, J Mol Biol. 2004 Aug 20;341(4):1049-62. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15289102 15289102]
+
[[Category: Saccharomyces cerevisiae]]
[[Category: Saccharomyces cerevisiae]]
-
[[Category: Single protein]]
+
[[Category: Biosca JA]]
-
[[Category: Biosca, J A.]]
+
[[Category: Fita I]]
-
[[Category: Fita, I.]]
+
[[Category: Larroy C]]
-
[[Category: Larroy, C.]]
+
[[Category: Ochoa WF]]
-
[[Category: Ochoa, W F.]]
+
[[Category: Pares X]]
-
[[Category: Pares, X.]]
+
[[Category: Valencia E]]
-
[[Category: Valencia, E.]]
+
-
[[Category: Adh topology]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 16:22:53 2008''
+

Current revision

Crystal Structure of the NADP(H)-Dependent Cinnamyl Alcohol Dehydrogenase from Saccharomyces cerevisiae

PDB ID 1ps0

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools