This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1ps6

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "1ps6" [edit=sysop:move=sysop])
Current revision (08:10, 14 February 2024) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1ps6.png|left|200px]]
 
-
{{STRUCTURE_1ps6| PDB=1ps6 | SCENE= }}
+
==Crystal structure of E.coli PdxA==
-
 
+
<StructureSection load='1ps6' size='340' side='right'caption='[[1ps6]], [[Resolution|resolution]] 2.25&Aring;' scene=''>
-
===Crystal structure of E.coli PdxA===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[1ps6]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PS6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1PS6 FirstGlance]. <br>
-
{{ABSTRACT_PUBMED_12896974}}
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.25&#8491;</td></tr>
-
 
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=4TP:4-HYDROXY-L-THREONINE-5-MONOPHOSPHATE'>4TP</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ps6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ps6 OCA], [https://pdbe.org/1ps6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ps6 RCSB], [https://www.ebi.ac.uk/pdbsum/1ps6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ps6 ProSAT]</span></td></tr>
-
[[1ps6]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PS6 OCA].
+
</table>
-
 
+
== Function ==
-
==Reference==
+
[https://www.uniprot.org/uniprot/PDXA_ECOLI PDXA_ECOLI] Catalyzes the NAD(P)-dependent oxidation of 4-(phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP).[REFERENCE:5]<ref>PMID:15026039</ref>
-
<ref group="xtra">PMID:012896974</ref><references group="xtra"/>
+
== Evolutionary Conservation ==
-
[[Category: 4-hydroxythreonine-4-phosphate dehydrogenase]]
+
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ps/1ps6_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ps6 ConSurf].
 +
<div style="clear:both"></div>
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
-
[[Category: Banks, J.]]
+
[[Category: Large Structures]]
-
[[Category: Cane, D E.]]
+
[[Category: Banks J]]
-
[[Category: Cygler, M.]]
+
[[Category: Cane DE]]
-
[[Category: Li, Y.]]
+
[[Category: Cygler M]]
-
[[Category: Matte, A.]]
+
[[Category: Li Y]]
-
[[Category: Sivaraman, J.]]
+
[[Category: Matte A]]
-
[[Category: Oxidoreductase]]
+
[[Category: Sivaraman J]]
-
[[Category: Pdxa]]
+
-
[[Category: Plp]]
+
-
[[Category: Pyridoxal 5'-phosphate biosynthesis]]
+

Current revision

Crystal structure of E.coli PdxA

PDB ID 1ps6

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1ps6"
Personal tools