This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1r94

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /><applet load="1r94" size="450" color="white" frame="true" align="right" spinBox="true" caption="1r94, resolution 2.30&Aring;" /> '''Crystal Structure of...)
Current revision (08:21, 14 February 2024) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1r94.jpg|left|200px]]<br /><applet load="1r94" size="450" color="white" frame="true" align="right" spinBox="true"
 
-
caption="1r94, resolution 2.30&Aring;" />
 
-
'''Crystal Structure of IscA (MERCURY DERIVATIVE)'''<br />
 
-
==Overview==
+
==Crystal Structure of IscA (MERCURY DERIVATIVE)==
-
IscA belongs to an ancient family of proteins responsible for iron-sulfur, cluster assembly in essential metabolic pathways preserved throughout, evolution. We report here the 2.3 A resolution crystal structure of, Escherichia coli IscA, a novel fold in which mixed beta-sheets form a, compact alpha-beta sandwich domain. In contrast to the highly mobile, secondary structural elements within the bacterial Fe-S scaffold protein, IscU, a protein which is thought to have a similar function, the great, majority of the amino acids that are conserved in IscA homologues are, located in elements that constitute a well-ordered fold. However, the, 10-residue C-terminal tail segment that contains two invariant cysteines, critical for the Fe-S-binding function of a cyanobacterial (Synechocystis, PCC) IscA homologue is not ordered in our structure. In addition, the, crystal packing reveals a helical assembly that is constructed from two, possible tetrameric oligomers of IscA.
+
<StructureSection load='1r94' size='340' side='right'caption='[[1r94]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
-
 
+
== Structural highlights ==
-
==About this Structure==
+
<table><tr><td colspan='2'>[[1r94]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1R94 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1R94 FirstGlance]. <br>
-
1R94 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] with HG as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1R94 OCA].
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
-
 
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HG:MERCURY+(II)+ION'>HG</scene></td></tr>
-
==Reference==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1r94 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1r94 OCA], [https://pdbe.org/1r94 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1r94 RCSB], [https://www.ebi.ac.uk/pdbsum/1r94 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1r94 ProSAT]</span></td></tr>
-
Crystal structure of the ancient, Fe-S scaffold IscA reveals a novel protein fold., Bilder PW, Ding H, Newcomer ME, Biochemistry. 2004 Jan 13;43(1):133-9. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=14705938 14705938]
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/ISCA_ECOLI ISCA_ECOLI] Is able to transfer iron-sulfur clusters to apo-ferredoxin. Multiple cycles of [2Fe2S] cluster formation and transfer are observed, suggesting that IscA acts catalytically. Recruits intracellular free iron so as to provide iron for the assembly of transient iron-sulfur cluster in IscU in the presence of IscS, L-cysteine and the thioredoxin reductase system TrxA/TrxB.[HAMAP-Rule:MF_01429]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/r9/1r94_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1r94 ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
-
[[Category: Bilder, P.W.]]
+
[[Category: Bilder PW]]
-
[[Category: Ding, H.]]
+
[[Category: Ding H]]
-
[[Category: Newcomer, M.E.]]
+
[[Category: Newcomer ME]]
-
[[Category: HG]]
+
-
[[Category: beta barrel]]
+
-
[[Category: iron-sulfur cluster protein]]
+
-
[[Category: pseudo-symmetric motifs]]
+
-
[[Category: tetrameric]]
+
-
 
+
-
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 01:21:44 2007''
+

Current revision

Crystal Structure of IscA (MERCURY DERIVATIVE)

PDB ID 1r94

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools