This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1rgp

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:22, 14 February 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1rgp.png|left|200px]]
 
-
<!--
+
==GTPASE-ACTIVATION DOMAIN FROM RHOGAP==
-
The line below this paragraph, containing "STRUCTURE_1rgp", creates the "Structure Box" on the page.
+
<StructureSection load='1rgp' size='340' side='right'caption='[[1rgp]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1rgp]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RGP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1RGP FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1rgp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rgp OCA], [https://pdbe.org/1rgp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1rgp RCSB], [https://www.ebi.ac.uk/pdbsum/1rgp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1rgp ProSAT]</span></td></tr>
-
{{STRUCTURE_1rgp| PDB=1rgp | SCENE= }}
+
</table>
-
 
+
== Function ==
-
===GTPASE-ACTIVATION DOMAIN FROM RHOGAP===
+
[https://www.uniprot.org/uniprot/RHG01_HUMAN RHG01_HUMAN] GTPase activator for the Rho, Rac and Cdc42 proteins, converting them to the putatively inactive GDP-bound state. Cdc42 seems to be the preferred substrate.
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
<!--
+
Check<jmol>
-
The line below this paragraph, {{ABSTRACT_PUBMED_9009196}}, adds the Publication Abstract to the page
+
<jmolCheckbox>
-
(as it appears on PubMed at http://www.pubmed.gov), where 9009196 is the PubMed ID number.
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rg/1rgp_consurf.spt"</scriptWhenChecked>
-
-->
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
{{ABSTRACT_PUBMED_9009196}}
+
<text>to colour the structure by Evolutionary Conservation</text>
-
 
+
</jmolCheckbox>
-
==About this Structure==
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1rgp ConSurf].
-
1RGP is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RGP OCA].
+
<div style="clear:both"></div>
-
 
+
__TOC__
-
==Reference==
+
</StructureSection>
-
The structure of the GTPase-activating domain from p50rhoGAP., Barrett T, Xiao B, Dodson EJ, Dodson G, Ludbrook SB, Nurmahomed K, Gamblin SJ, Musacchio A, Smerdon SJ, Eccleston JF, Nature. 1997 Jan 30;385(6615):458-61. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/9009196 9009196]
+
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
-
[[Category: Barrett, T.]]
+
[[Category: Barrett T]]
-
[[Category: Dodson, E J.]]
+
[[Category: Dodson EJ]]
-
[[Category: Dodson, G.]]
+
[[Category: Dodson G]]
-
[[Category: Eccleston, J F.]]
+
[[Category: Eccleston JF]]
-
[[Category: Gamblin, S J.]]
+
[[Category: Gamblin SJ]]
-
[[Category: Ludbrook, S B.]]
+
[[Category: Ludbrook SB]]
-
[[Category: Musacchio, A.]]
+
[[Category: Musacchio A]]
-
[[Category: Nurmahomed, K.]]
+
[[Category: Nurmahomed K]]
-
[[Category: Smerdon, S J.]]
+
[[Category: Smerdon SJ]]
-
[[Category: Xiao, B.]]
+
[[Category: Xiao B]]
-
[[Category: G-protein]]
+
-
[[Category: Gap]]
+
-
[[Category: Signal-transduction]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 12:18:10 2008''
+

Current revision

GTPASE-ACTIVATION DOMAIN FROM RHOGAP

PDB ID 1rgp

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools