This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1ris

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:23, 14 February 2024) (edit) (undo)
 
(14 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1ris.jpg|left|200px]]
 
-
{{Structure
+
==CRYSTAL STRUCTURE OF THE RIBOSOMAL PROTEIN S6 FROM THERMUS THERMOPHILUS==
-
|PDB= 1ris |SIZE=350|CAPTION= <scene name='initialview01'>1ris</scene>, resolution 2.0&Aring;
+
<StructureSection load='1ris' size='340' side='right'caption='[[1ris]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND=
+
<table><tr><td colspan='2'>[[1ris]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RIS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1RIS FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
|GENE=
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ris FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ris OCA], [https://pdbe.org/1ris PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ris RCSB], [https://www.ebi.ac.uk/pdbsum/1ris PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ris ProSAT]</span></td></tr>
-
|DOMAIN=
+
</table>
-
|RELATEDENTRY=
+
== Function ==
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ris FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ris OCA], [http://www.ebi.ac.uk/pdbsum/1ris PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1ris RCSB]</span>
+
[https://www.uniprot.org/uniprot/RS6_THETH RS6_THETH] Located on the outer edge of the platform on the body of the 30S subunit (By similarity).
-
}}
+
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ri/1ris_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ris ConSurf].
 +
<div style="clear:both"></div>
-
'''CRYSTAL STRUCTURE OF THE RIBOSOMAL PROTEIN S6 FROM THERMUS THERMOPHILUS'''
+
==See Also==
-
 
+
*[[Ribosomal protein S6|Ribosomal protein S6]]
-
 
+
__TOC__
-
==Overview==
+
</StructureSection>
-
The amino acid sequence and crystal structure of the ribosomal protein S6 from the small ribosomal subunit of Thermus thermophilus have been determined. S6 is a small protein with 101 amino acid residues. The 3D structure, which was determined to 2.0 A resolution, consists of a four-stranded anti-parallel beta-sheet with two alpha-helices packed on one side. Similar folding patterns have been observed for other ribosomal proteins and may suggest an original RNA-interacting motif. Related topologies are also found in several other nucleic acid-interacting proteins and based on the assumption that the structure of the ribosome was established early in the molecular evolution, the possibility that an ancestral RNA-interacting motif in ribosomal proteins is the evolutionary origin for the nucleic acid-interacting domain in large classes of ribonucleic acid binding proteins should be considered.
+
[[Category: Large Structures]]
-
 
+
-
==About this Structure==
+
-
1RIS is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RIS OCA].
+
-
 
+
-
==Reference==
+
-
Crystal structure of the ribosomal protein S6 from Thermus thermophilus., Lindahl M, Svensson LA, Liljas A, Sedelnikova SE, Eliseikina IA, Fomenkova NP, Nevskaya N, Nikonov SV, Garber MB, Muranova TA, et al., EMBO J. 1994 Mar 15;13(6):1249-54. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/8137808 8137808]
+
-
[[Category: Single protein]]
+
[[Category: Thermus thermophilus]]
[[Category: Thermus thermophilus]]
-
[[Category: Amons, R.]]
+
[[Category: Amons R]]
-
[[Category: Eliseikina, I A.]]
+
[[Category: Eliseikina IA]]
-
[[Category: Fomenkova, N P.]]
+
[[Category: Fomenkova NP]]
-
[[Category: Garber, M B.]]
+
[[Category: Garber MB]]
-
[[Category: Liljas, A.]]
+
[[Category: Liljas A]]
-
[[Category: Lindahl, M.]]
+
[[Category: Lindahl M]]
-
[[Category: Muranova, T A.]]
+
[[Category: Muranova TA]]
-
[[Category: Nevskaya, N.]]
+
[[Category: Nevskaya N]]
-
[[Category: Nikonov, S V.]]
+
[[Category: Nikonov SV]]
-
[[Category: Rykonova, A I.]]
+
[[Category: Rykonova AI]]
-
[[Category: Sedelnikova, S E.]]
+
[[Category: Sedelnikova SE]]
-
[[Category: Svensson, L A.]]
+
[[Category: Svensson LA]]
-
[[Category: ribosomal protein]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 23:28:44 2008''
+

Current revision

CRYSTAL STRUCTURE OF THE RIBOSOMAL PROTEIN S6 FROM THERMUS THERMOPHILUS

PDB ID 1ris

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1ris"
Personal tools