This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1siu

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:31, 14 February 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1siu.png|left|200px]]
 
-
<!--
+
==KUMAMOLISIN-AS E78H MUTANT==
-
The line below this paragraph, containing "STRUCTURE_1siu", creates the "Structure Box" on the page.
+
<StructureSection load='1siu' size='340' side='right'caption='[[1siu]], [[Resolution|resolution]] 2.31&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1siu]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Alicyclobacillus_sendaiensis Alicyclobacillus sendaiensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SIU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1SIU FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.31&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
{{STRUCTURE_1siu| PDB=1siu | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1siu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1siu OCA], [https://pdbe.org/1siu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1siu RCSB], [https://www.ebi.ac.uk/pdbsum/1siu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1siu ProSAT]</span></td></tr>
-
 
+
</table>
-
===KUMAMOLISIN-AS E78H MUTANT===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q8GB88_9BACL Q8GB88_9BACL]
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_15014068}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 15014068 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/si/1siu_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_15014068}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
1SIU is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Alicyclobacillus_sendaiensis Alicyclobacillus sendaiensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SIU OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1siu ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
__TOC__
-
<ref group="xtra">PMID:15014068</ref><references group="xtra"/>
+
</StructureSection>
[[Category: Alicyclobacillus sendaiensis]]
[[Category: Alicyclobacillus sendaiensis]]
-
[[Category: Ashida, M.]]
+
[[Category: Large Structures]]
-
[[Category: Gustchina, A.]]
+
[[Category: Ashida M]]
-
[[Category: Li, M.]]
+
[[Category: Gustchina A]]
-
[[Category: Minakata, H.]]
+
[[Category: Li M]]
-
[[Category: Nakayama, T.]]
+
[[Category: Minakata H]]
-
[[Category: Nishino, T.]]
+
[[Category: Nakayama T]]
-
[[Category: Oda, K.]]
+
[[Category: Nishino T]]
-
[[Category: Oyama, H.]]
+
[[Category: Oda K]]
-
[[Category: Tsuruoka, N.]]
+
[[Category: Oyama H]]
-
[[Category: Wlodawer, A.]]
+
[[Category: Tsuruoka N]]
-
[[Category: E78h]]
+
[[Category: Wlodawer A]]
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 20:04:02 2009''
+

Current revision

KUMAMOLISIN-AS E78H MUTANT

PDB ID 1siu

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools