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1soi

From Proteopedia

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{{Seed}}
 
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[[Image:1soi.png|left|200px]]
 
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<!--
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==CRYSTAL STRUCTURE OF NUDIX HYDROLASE DR1025 IN COMPLEX WITH SM+3==
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The line below this paragraph, containing "STRUCTURE_1soi", creates the "Structure Box" on the page.
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<StructureSection load='1soi' size='340' side='right'caption='[[1soi]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1soi]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Deinococcus_radiodurans Deinococcus radiodurans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SOI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1SOI FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SM:SAMARIUM+(III)+ION'>SM</scene></td></tr>
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{{STRUCTURE_1soi| PDB=1soi | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1soi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1soi OCA], [https://pdbe.org/1soi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1soi RCSB], [https://www.ebi.ac.uk/pdbsum/1soi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1soi ProSAT], [https://www.topsan.org/Proteins/BSGC/1soi TOPSAN]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Y1025_DEIRA Y1025_DEIRA] Hydrolase that can act as a nucleoside triphosphatase and a dinucleoside polyphosphate pyrophosphatase. The best substrates are 8-oxo-dGTP and 8-oxo-GTP. Other substrates include Ap4A, dGTP and GTP. May be involved in protection from damage caused by radiation.<ref>PMID:23481913</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/so/1soi_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1soi ConSurf].
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<div style="clear:both"></div>
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===CRYSTAL STRUCTURE OF NUDIX HYDROLASE DR1025 IN COMPLEX WITH SM+3===
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==See Also==
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*[[Nudix hydrolase 3D structures|Nudix hydrolase 3D structures]]
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== References ==
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<references/>
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The line below this paragraph, {{ABSTRACT_PUBMED_15123424}}, adds the Publication Abstract to the page
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__TOC__
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(as it appears on PubMed at http://www.pubmed.gov), where 15123424 is the PubMed ID number.
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</StructureSection>
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{{ABSTRACT_PUBMED_15123424}}
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==About this Structure==
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1SOI is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Deinococcus_radiodurans Deinococcus radiodurans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SOI OCA].
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==Reference==
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<ref group="xtra">PMID:15123424</ref><references group="xtra"/>
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[[Category: Deinococcus radiodurans]]
[[Category: Deinococcus radiodurans]]
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[[Category: BSGC, Berkeley Structural Genomics Center.]]
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[[Category: Large Structures]]
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[[Category: Bessman, M J.]]
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[[Category: Bessman MJ]]
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[[Category: Brenner, S E.]]
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[[Category: Brenner SE]]
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[[Category: Hill, E E.]]
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[[Category: Hill EE]]
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[[Category: Holbrook, E L.]]
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[[Category: Holbrook EL]]
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[[Category: Holbrook, S R.]]
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[[Category: Holbrook SR]]
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[[Category: Mooster, J L.]]
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[[Category: Mooster JL]]
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[[Category: Ranatunga, W.]]
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[[Category: Ranatunga W]]
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[[Category: Schulze-Gahmen, U.]]
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[[Category: Schulze-Gahmen U]]
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[[Category: Xu, W.]]
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[[Category: Xu W]]
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[[Category: Alpha-beta-alpha sandwich]]
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[[Category: Berkeley structural genomics center]]
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[[Category: Bsgc structure funded by nih]]
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[[Category: Nudix fold]]
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[[Category: Protein structure initiative]]
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[[Category: Psi]]
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[[Category: Structural genomic]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 12:48:35 2009''
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Current revision

CRYSTAL STRUCTURE OF NUDIX HYDROLASE DR1025 IN COMPLEX WITH SM+3

PDB ID 1soi

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