This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1sv6

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:34, 14 February 2024) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal structure of 2-hydroxypentadienoic acid hydratase from Escherichia Coli==
==Crystal structure of 2-hydroxypentadienoic acid hydratase from Escherichia Coli==
-
<StructureSection load='1sv6' size='340' side='right' caption='[[1sv6]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
+
<StructureSection load='1sv6' size='340' side='right'caption='[[1sv6]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1sv6]] is a 5 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SV6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1SV6 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1sv6]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SV6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1SV6 FirstGlance]. <br>
-
</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">MHPD, B0350 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])</td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.9&#8491;</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1sv6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1sv6 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1sv6 RCSB], [http://www.ebi.ac.uk/pdbsum/1sv6 PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/1sv6 TOPSAN]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1sv6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1sv6 OCA], [https://pdbe.org/1sv6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1sv6 RCSB], [https://www.ebi.ac.uk/pdbsum/1sv6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1sv6 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/1sv6 TOPSAN]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/MHPD_ECOLI MHPD_ECOLI]] Catalyzes the conversion of 2-hydroxypentadienoic acid (enolic form of 2-oxopent-4-enoate) to 4-hydroxy-2-ketopentanoic acid.<ref>PMID:9492273</ref>
+
[https://www.uniprot.org/uniprot/MHPD_ECOLI MHPD_ECOLI] Catalyzes the conversion of 2-hydroxypentadienoic acid (enolic form of 2-oxopent-4-enoate) to 4-hydroxy-2-ketopentanoic acid.<ref>PMID:9492273</ref>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/sv/1sv6_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/sv/1sv6_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1sv6 ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
== References ==
== References ==
Line 23: Line 24:
</StructureSection>
</StructureSection>
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
-
[[Category: Almo, S C]]
+
[[Category: Large Structures]]
-
[[Category: Burley, S K]]
+
[[Category: Almo SC]]
-
[[Category: Fedorov, A A]]
+
[[Category: Burley SK]]
-
[[Category: Fedorov, E V]]
+
[[Category: Fedorov AA]]
-
[[Category: Structural genomic]]
+
[[Category: Fedorov EV]]
-
[[Category: Sharp, A]]
+
[[Category: Sharp A]]
-
[[Category: Hydratase]]
+
-
[[Category: Lyase]]
+
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
+
-
[[Category: PSI, Protein structure initiative]]
+

Current revision

Crystal structure of 2-hydroxypentadienoic acid hydratase from Escherichia Coli

PDB ID 1sv6

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1sv6"
Personal tools