This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1t5t

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:36, 14 February 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1t5t.png|left|200px]]
 
-
{{STRUCTURE_1t5t| PDB=1t5t | SCENE= }}
+
==Structure of the (SR)Ca2+-ATPase Ca2-E1-ADP:AlF4- form==
-
 
+
<StructureSection load='1t5t' size='340' side='right'caption='[[1t5t]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
-
===Structure of the (SR)Ca2+-ATPase Ca2-E1-ADP:AlF4- form===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[1t5t]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Oryctolagus_cuniculus Oryctolagus cuniculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1T5T OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1T5T FirstGlance]. <br>
-
{{ABSTRACT_PUBMED_15192230}}
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.9&#8491;</td></tr>
-
 
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=ALF:TETRAFLUOROALUMINATE+ION'>ALF</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1t5t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1t5t OCA], [https://pdbe.org/1t5t PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1t5t RCSB], [https://www.ebi.ac.uk/pdbsum/1t5t PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1t5t ProSAT]</span></td></tr>
-
[[1t5t]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Oryctolagus_cuniculus Oryctolagus cuniculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1T5T OCA].
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/AT2A1_RABIT AT2A1_RABIT] This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the translocation of calcium from the cytosol to the sarcoplasmic reticulum lumen. Contributes to calcium sequestration involved in muscular excitation/contraction (By similarity).
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/t5/1t5t_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1t5t ConSurf].
 +
<div style="clear:both"></div>
==See Also==
==See Also==
-
*[[ATPase|ATPase]]
+
*[[ATPase 3D structures|ATPase 3D structures]]
-
 
+
__TOC__
-
==Reference==
+
</StructureSection>
-
<ref group="xtra">PMID:015192230</ref><ref group="xtra">PMID:015383548</ref><ref group="xtra">PMID:018956892</ref><references group="xtra"/>
+
[[Category: Large Structures]]
-
[[Category: Calcium-transporting ATPase]]
+
[[Category: Oryctolagus cuniculus]]
[[Category: Oryctolagus cuniculus]]
-
[[Category: Moller, J V.]]
+
[[Category: Moller JV]]
-
[[Category: Nissen, P.]]
+
[[Category: Nissen P]]
-
[[Category: Sorensen, T L.M.]]
+
[[Category: Sorensen TL-M]]
-
[[Category: Calcium pump]]
+
-
[[Category: Catalytic mechanism]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Membrane protein]]
+
-
[[Category: Occlusion]]
+
-
[[Category: Phosphorylation]]
+
-
[[Category: Transition state]]
+

Current revision

Structure of the (SR)Ca2+-ATPase Ca2-E1-ADP:AlF4- form

PDB ID 1t5t

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools