1t8f

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(New page: 200px<br /><applet load="1t8f" size="450" color="white" frame="true" align="right" spinBox="true" caption="1t8f, resolution 2.15&Aring;" /> '''Crystal structure of...)
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[[Image:1t8f.jpg|left|200px]]<br /><applet load="1t8f" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1t8f, resolution 2.15&Aring;" />
 
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'''Crystal structure of phage T4 lysozyme mutant R14A/K16A/I17A/K19A/T21A/E22A/C54T/C97A'''<br />
 
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==Overview==
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==Crystal structure of phage T4 lysozyme mutant R14A/K16A/I17A/K19A/T21A/E22A/C54T/C97A==
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In general, alpha-helical conformations in proteins depend in large part, on the amino acid residues within the helix and their proximal, interactions. For example, an alanine residue has a high propensity to, adopt an alpha-helical conformation, whereas that of a glycine residue is, low. The sequence preferences for beta-sheet formation are less obvious., To identify the factors that influence beta-sheet conformation, a series, of scanning polyalanine mutations were made within the strands and, associated turns of the beta-sheet region in T4 lysozyme. For each, construct the stability of the folded protein was reduced substantially, consistent with removal of native packing interactions. However, the, crystal structures showed that each of the mutants retained the beta-sheet, conformation. These results suggest that the structure of the beta-sheet, region of T4 lysozyme is maintained to a substantial extent by tertiary, interactions with the surrounding parts of the protein. Such tertiary, interactions may be important in determining the structures of beta-sheets, in general.
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<StructureSection load='1t8f' size='340' side='right'caption='[[1t8f]], [[Resolution|resolution]] 2.15&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1t8f]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_T4 Escherichia virus T4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1T8F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1T8F FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.15&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BME:BETA-MERCAPTOETHANOL'>BME</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1t8f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1t8f OCA], [https://pdbe.org/1t8f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1t8f RCSB], [https://www.ebi.ac.uk/pdbsum/1t8f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1t8f ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/ENLYS_BPT4 ENLYS_BPT4] Endolysin with lysozyme activity that degrades host peptidoglycans and participates with the holin and spanin proteins in the sequential events which lead to the programmed host cell lysis releasing the mature viral particles. Once the holin has permeabilized the host cell membrane, the endolysin can reach the periplasm and break down the peptidoglycan layer.<ref>PMID:22389108</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/t8/1t8f_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1t8f ConSurf].
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<div style="clear:both"></div>
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==About this Structure==
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==See Also==
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1T8F is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Bacteriophage_t4 Bacteriophage t4] with CL and BME as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1T8F OCA].
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*[[Lysozyme 3D structures|Lysozyme 3D structures]]
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== References ==
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==Reference==
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<references/>
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Alanine-scanning mutagenesis of the beta-sheet region of phage T4 lysozyme suggests that tertiary context has a dominant effect on beta-sheet formation., He MM, Wood ZA, Baase WA, Xiao H, Matthews BW, Protein Sci. 2004 Oct;13(10):2716-24. Epub 2004 Aug 31. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=15340171 15340171]
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__TOC__
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[[Category: Bacteriophage t4]]
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</StructureSection>
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[[Category: Lysozyme]]
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[[Category: Escherichia virus T4]]
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[[Category: Single protein]]
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[[Category: Large Structures]]
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[[Category: Baase, W.A.]]
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[[Category: Baase WA]]
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[[Category: He, M.M.]]
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[[Category: He MM]]
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[[Category: Matthews, B.W.]]
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[[Category: Matthews BW]]
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[[Category: Wood, Z.A.]]
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[[Category: Wood ZA]]
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[[Category: Xiao, H.]]
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[[Category: Xiao H]]
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[[Category: BME]]
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[[Category: CL]]
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[[Category: lysozyme]]
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[[Category: poly-alanine mutation]]
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[[Category: t4]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 03:04:05 2007''
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Current revision

Crystal structure of phage T4 lysozyme mutant R14A/K16A/I17A/K19A/T21A/E22A/C54T/C97A

PDB ID 1t8f

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