This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
1tb5
From Proteopedia
(Difference between revisions)
| (6 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:1tb5.png|left|200px]] | ||
| - | + | ==Catalytic Domain Of Human Phosphodiesterase 4B In Complex With AMP== | |
| - | + | <StructureSection load='1tb5' size='340' side='right'caption='[[1tb5]], [[Resolution|resolution]] 2.15Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[1tb5]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TB5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1TB5 FirstGlance]. <br> | |
| - | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.15Å</td></tr> | |
| - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AMP:ADENOSINE+MONOPHOSPHATE'>AMP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | |
| - | == | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1tb5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tb5 OCA], [https://pdbe.org/1tb5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1tb5 RCSB], [https://www.ebi.ac.uk/pdbsum/1tb5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1tb5 ProSAT]</span></td></tr> |
| - | [[1tb5]] is a 2 chain structure with sequence from [ | + | </table> |
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/PDE4B_HUMAN PDE4B_HUMAN] Hydrolyzes the second messenger cAMP, which is a key regulator of many important physiological processes. May be involved in mediating central nervous system effects of therapeutic agents ranging from antidepressants to antiasthmatic and anti-inflammatory agents.<ref>PMID:10846163</ref> <ref>PMID:15003452</ref> | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/tb/1tb5_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1tb5 ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
==See Also== | ==See Also== | ||
| - | *[[Phosphodiesterase|Phosphodiesterase]] | + | *[[Phosphodiesterase 3D structures|Phosphodiesterase 3D structures]] |
| - | + | == References == | |
| - | == | + | <references/> |
| - | < | + | __TOC__ |
| - | + | </StructureSection> | |
[[Category: Homo sapiens]] | [[Category: Homo sapiens]] | ||
| - | [[Category: Artis | + | [[Category: Large Structures]] |
| - | [[Category: Bollag | + | [[Category: Artis DR]] |
| - | [[Category: Card | + | [[Category: Bollag G]] |
| - | [[Category: Fong | + | [[Category: Card GL]] |
| - | [[Category: Gillette | + | [[Category: Fong D]] |
| - | [[Category: Hsieh | + | [[Category: Gillette S]] |
| - | [[Category: Kim | + | [[Category: Hsieh D]] |
| - | [[Category: Milburn | + | [[Category: Kim S-H]] |
| - | [[Category: Neiman | + | [[Category: Milburn MV]] |
| - | [[Category: Schlessinger | + | [[Category: Neiman J]] |
| - | [[Category: Suzuki | + | [[Category: Schlessinger J]] |
| - | [[Category: West | + | [[Category: Suzuki Y]] |
| - | [[Category: Zhang | + | [[Category: West BL]] |
| - | [[Category: Zhang | + | [[Category: Zhang C]] |
| - | + | [[Category: Zhang KYJ]] | |
| - | + | ||
Current revision
Catalytic Domain Of Human Phosphodiesterase 4B In Complex With AMP
| |||||||||||
Categories: Homo sapiens | Large Structures | Artis DR | Bollag G | Card GL | Fong D | Gillette S | Hsieh D | Kim S-H | Milburn MV | Neiman J | Schlessinger J | Suzuki Y | West BL | Zhang C | Zhang KYJ

